Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2526 ATGTCTGAGACAAAGATGGACGAAGCAGGAGAAGCTGGAGAAAGGCCTATTTTCAGAGATATTAGACGTTATTTCTGTGAATATTGTGGCATCTGCAGGTCCAAAAAAACCCTGATAACATATCATATCAATACTCACCACAAGGAGGAGTTGGAGAAAGCAAGCTTGGATAAAGATCATGAAGCAGGGGGCATAAAATCCAACACTTGTGGGGAATGTGGTGCTTGTTTCAAAAAACCGGCCTATTTGAAACAACACATGCAAAGCCATTCGCTTGAGAGGCCATATGTGTGTACAATTGATGATTGTCGAGCAAGTTACAGAAGAAAAGACCACTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTACAAATGTCCAATTGAGGGTTGCAATCGTGAGTTTTCTTTTCAAGGGAATATGACCAGACATGTCAAGGAATTTCATAGTGAGAATTCTACCCAAACTAAAGTTGAATGTCAGAAGCAGTATGTATGCCCAGAAATTGGTTGTGGAAAGGTTTTCCAATTTGCATCAAAGCTACAAAAGCATGAAAATTCTCATGTTAAGCTGGACTCAGTAGAGGTTGTTTGCTTAGATCCTGGTTGTATGAAACATTTCACTAATACCCAGTGCCTTCAAGCCCATATCAAAGCCTGCCATCAATATGTAACATGTGAGACTTGTGGGAAAAAGGAGCTGAAGAAGAATATTAAGCGGCACCTCCGATTGCATGAAACTGGTAGCTCACCAGAGGCTCTTAAATGTGAATACAAGGGTTGTAGCAGCACATTCTCAAGTAAATCCAATCTTCATAAGCATGTGAAGGTTATACACTTTAAAGACAAACCTTTTGTGTGTGGCTTTCCTGATTGTGGCATGAGTTTTGCTTACAAACATGTCAGGGACAACCATGAAAAAACAGGGCTACACGTCTATACGCATGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGAAAGAGAAAGTGTCCTACAATAGAAATGTTAATTAGGAAGAGAGTTACTCCTCCCAGTGAATTGGAGCACCGGTTATTTATGGAGACTGAGTAG 1095 0.41 MSETKMDEAGEAGERPIFRDIRRYFCEYCGICRSKKTLITYHINTHHKEELEKASLDKDHEAGGIKSNTCGECGACFKKPAYLKQHMQSHSLERPYVCTIDDCRASYRRKDHLTRHLLQHEGKTYKCPIEGCNREFSFQGNMTRHVKEFHSENSTQTKVECQKQYVCPEIGCGKVFQFASKLQKHENSHVKLDSVEVVCLDPGCMKHFTNTQCLQAHIKACHQYVTCETCGKKELKKNIKRHLRLHETGSSPEALKCEYKGCSSTFSSKSNLHKHVKVIHFKDKPFVCGFPDCGMSFAYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGRKRKCPTIEMLIRKRVTPPSELEHRLFMETE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 155 IPR013087 -
Bisa02g2526 364 SUPERFAMILY beta-beta-alpha zinc fingers 237 290 IPR036236 -
Bisa02g2526 364 Gene3D Classic Zinc Finger 123 151 - -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
Bisa02g2526 364 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Bisa02g2526 364 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Bisa02g2526 364 Pfam Zinc finger, C2H2 type 96 120 IPR013087 -
Bisa02g2526 364 Pfam Zinc finger, C2H2 type 125 150 IPR013087 -
Bisa02g2526 364 PANTHER ZINC FINGER PROTEIN 7 355 - -
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Bisa02g2526 364 SUPERFAMILY beta-beta-alpha zinc fingers 106 163 IPR036236 -
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Bisa02g2526 364 Gene3D Classic Zinc Finger 15 95 - -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 127 150 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 197 222 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 255 280 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 286 312 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 96 120 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 125 150 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 24 46 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 68 90 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 225 246 IPR013087 -
Bisa02g2526 364 SMART c2h2final6 165 189 IPR013087 -
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Bisa02g2526 364 Gene3D Classic Zinc Finger 152 225 - -
Bisa02g2526 364 SUPERFAMILY beta-beta-alpha zinc fingers 82 122 IPR036236 -
Bisa02g2526 364 Gene3D Classic Zinc Finger 250 331 - -
Bisa02g2526 364 SUPERFAMILY beta-beta-alpha zinc fingers 162 191 IPR036236 -
Bisa02g2526 364 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Bisa02g2526 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Bisa02g2526 364 Gene3D Classic Zinc Finger 96 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2526 Bisa-ChrBisa02 63714586 63717355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2526 92 315 C2H2 Transcription Factor Family AT1G72050 52.174 6.36e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g2526 zf-C2H2 0.0012 CL0361