Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2516 ATGAACATGTTAGGCCTCAGAGACCTCGTTCTGATAGCTCCATCCCCTTCTTCCCTTCACCATCAACAACAGCAACAACAACAACAACAACCCCAGGCTCCCATTTCCTCAGACCATCACCATCACCACCATTCAAACCTTCCTCTTCCTTCTTCTGCTTCTCTCAGCGTTGGCCTCGGCATCTTCCCTCTTCTCACCGCCACTCCCTGCGTACCACCCCACGACCCTTCTCACTCCAATGACCTCCAACAGGATTGCGCTAATCATAACCACAATAACAATAATAATACTAACCATTCCAATTTCTGGAACCTCAAGATGTCTCCGGAAGTGACGAATTCTGCCAAAAAAGGGGTAATCGACGCCGACAGCGAGGAGAATGGGATTTTTGGTGGCGATTTTAGGGTGTGTCAGGATTGTGGGAATAGGGCGAAGAAAGATTGTGGGTACAGAAGATGCCGGACTTGTTGCAAGGGACGAGGGTACGATTGCAGCACTCACCTCAAGAGCACGTGGGTCCCCGCGGCGCGGCGGCGCGAGCGGCAGATGTTGATGACTGGCGCCGGCGGAGGAGGAGGCGATGGTAGTCTTGGGTCGTCTCCTGGTGCTAAAAGGATTAGAGCTTTGGGATCGTCGCAGAATGCCGCTACTACTACCTCTCATAGTTCTGCATCCAACGCTACCACACCAAGGAGCTTAGATACTACCTCTTGTCACCAAGATGCTAGTTTCAAACAGTCATTACCAGGTCAAGTTCGTGCCCCTGCGGTATTCAGGTGCCATAGAGTGTCTGCCATTGGTAATGGTGAAGATGAGTTTGTCTACGTGGCGACAGTGCATATAAGTGGTCATGTTTTCAAGGGTTTTCTGTATGATCAAGGGGTTGATGGGAAAAACGCAATCCCTTGTGTTTCAGAACTTCAATTGGGAAACTATAGCAGTGGAAAGAATAAGGAATGTTCTTCTCCAATTGGGGTTCCTACTAATGCATACCCTGCTTCTGGCTGCTGA 1011 0.4985 MNMLGLRDLVLIAPSPSSLHHQQQQQQQQQPQAPISSDHHHHHHSNLPLPSSASLSVGLGIFPLLTATPCVPPHDPSHSNDLQQDCANHNHNNNNNTNHSNFWNLKMSPEVTNSAKKGVIDADSEENGIFGGDFRVCQDCGNRAKKDCGYRRCRTCCKGRGYDCSTHLKSTWVPAARRRERQMLMTGAGGGGGDGSLGSSPGAKRIRALGSSQNAATTTSHSSASNATTPRSLDTTSCHQDASFKQSLPGQVRAPAVFRCHRVSAIGNGEDEFVYVATVHISGHVFKGFLYDQGVDGKNAIPCVSELQLGNYSSGKNKECSSPIGVPTNAYPASGC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2516 336 MobiDBLite consensus disorder prediction 77 98 - -
Bisa02g2516 336 MobiDBLite consensus disorder prediction 74 98 - -
Bisa02g2516 336 MobiDBLite consensus disorder prediction 17 52 - -
Bisa02g2516 336 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 322 IPR007818 GO:0003700|GO:0006355
Bisa02g2516 336 MobiDBLite consensus disorder prediction 209 237 - -
Bisa02g2516 336 NCBIfam LRP1 C-terminal domain 248 295 IPR006511 -
Bisa02g2516 336 MobiDBLite consensus disorder prediction 185 204 - -
Bisa02g2516 336 NCBIfam putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Bisa02g2516 336 MobiDBLite consensus disorder prediction 17 35 - -
Bisa02g2516 336 Pfam Domain of unknown function (DUF702) 136 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2516 Bisa-ChrBisa02 63448677 63450069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2516 1 330 C2H2 Transcription Factor Family AT5G12330 42.342 3.09e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bisa02g2516 DUF702 4.2e-55 No_clan