Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2460 ATGCCGAAGAAGAAGAAGCATAGCGAAAGCGATGAAGAAGACGTCTTCTATTACCGCTATCCTTCGTCGGCTCCATCCTCAAACTCAAACCCCACCAAAACCCACAAGAATCCCGGCGGCTCCAGCGGCTTGGCTCCCTCTAAGTCCACCCTCTACGTCTCCAACATCGACTTCTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCACCTTTGGCAAAATCGCCCGAGTCACCATTCTGAAGGACCGAGTCACTCGTCAGAGCCGCGGCGTCGCTTTCATCCAATACGTCTCCCGCGACGACGCCCAGAAAGCCGCTCGAGAGATGAACCGCAAGATCCTCAATGGCAGGACCTTGACGGCTTCCATCGCCGCCGACAACGGCCGAGCGCCGGAATTTATCAAGAAGAGGGTTTACAGGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGATGGGCATTTGTCTTATGAGTGTCCAAGGAATCAATTGGGGCCAAGGGAGCGTCCGATTCCGAAGCGTGAACGACGCGGCGGAGGCAGTGGTGGTGGCGGGAGTGAGCTTCGGCGGACGGAGGAGGATGACGACGGATCGGATGGTGGGGATCCGTTTGATGACGATAATTGGGCTTCTGTTGTGGATGATGGCGCGGATGAGAGGTTGCTCAAGGGGAACGAGAAGGTTGTGGAGAAGAAGAAGACGAAGATAGCAAGCTATTTCAGCGATGAGAGTGGCGATGAGGATGATTGA 750 0.5533 MPKKKKHSESDEEDVFYYRYPSSAPSSNSNPTKTHKNPGGSSGLAPSKSTLYVSNIDFSLTNSDLHTLFSTFGKIARVTILKDRVTRQSRGVAFIQYVSRDDAQKAAREMNRKILNGRTLTASIAADNGRAPEFIKKRVYRDKSRCYECGEDGHLSYECPRNQLGPRERPIPKRERRGGGSGGGGSELRRTEEDDDGSDGGDPFDDDNWASVVDDGADERLLKGNEKVVEKKKTKIASYFSDESGDEDD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2460 249 MobiDBLite consensus disorder prediction 157 217 - -
Bisa02g2460 249 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 133 - -
Bisa02g2460 249 SUPERFAMILY RNA-binding domain, RBD 45 133 IPR035979 GO:0003676
Bisa02g2460 249 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Bisa02g2460 249 MobiDBLite consensus disorder prediction 1 46 - -
Bisa02g2460 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Bisa02g2460 249 SUPERFAMILY Retrovirus zinc finger-like domains 130 162 IPR036875 GO:0003676|GO:0008270
Bisa02g2460 249 ProSiteProfiles Zinc finger CCHC-type profile. 145 161 IPR001878 GO:0003676|GO:0008270
Bisa02g2460 249 Gene3D - 136 170 - -
Bisa02g2460 249 SMART rrm2_1 50 123 IPR003954 GO:0003676
Bisa02g2460 249 MobiDBLite consensus disorder prediction 21 46 - -
Bisa02g2460 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Bisa02g2460 249 MobiDBLite consensus disorder prediction 1 16 - -
Bisa02g2460 249 Gene3D - 22 203 IPR012677 -
Bisa02g2460 249 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 136 171 - -
Bisa02g2460 249 CDD RRM_ZCRB1 48 123 IPR034219 -
Bisa02g2460 249 SMART rrm1_1 50 123 IPR000504 GO:0003723
Bisa02g2460 249 Pfam Zinc knuckle 145 160 IPR001878 GO:0003676|GO:0008270
Bisa02g2460 249 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 248 IPR044598 GO:0000398|GO:0005689
Bisa02g2460 249 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2460 Bisa-ChrBisa02 61622199 61622948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2460 51 125 Eukaryotic Initiation Factors Gene Family AT2G23350 32.000 3.81e-08 52.0