Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2396 ATGAAGAAGAAGAACAGAGGCCGCCGGAGCTTCGAACAGAGGGGGCCGGAGCTTCGAAAAAACACCTGCCGACGCTACCGTCATACCTTTCTCCCAGATCGAATGAGGATACCGATATTTAATATATTTTGCTCAGAGTTTTCATTAGATAAACTTAAATCCGAAATTTTACCACACTGGAACAATGGCAGTCATGTTAGTGAGCTTCTTCTGGGATCATATACCACCATAGGGCTTCTTGCAAATTTTATGATTAATGTATTCATCCTTCTCAATCTTTGTATCAAGACTTTATTCTTCTCAGAATTGTGTCCTTCTGAAGTTCGGAAACTGGTTGAGCGTCTCATTAATTATGTCATTTACAAGGTTTTGGTGACTGAGGATCATGGCCAATGTAATCGTTCCTTGGATATCTGGATTGTGGTTTCTGTGGAGAAACTGCTCATATTTGTAACTAATCTAAACATGCTAATATTTATGTTGCATGGATTCATTGCATTTCTTTTATTGGTTGGGAAGGAGGTTGAAGCAGTCAAGGAGGACAAAAATATGGGTGCTATGCAATGGGAGAGGTATATGTTACCAAATAGGGATCGTATGGAGAAAAAATTCTGTCTTGAGATGTTTCAAGCTTTAGTCAGAGATCGTTTGGAACAGTTGAATGCATCGCCATCTGCTACACCTTGGACATACTTTCGTGTATATTCAGCATTGTTATTGGTTTTCTTGGTTGATGTTTTCTGGATATGTCTATGTCTGGTGATATATAAAACACATAGGTCTTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTGAGCATTGCTTTTGAGACCCTACAGGCCATATTGGTACATGGATTCCAGTTACTTGATATATGGCTCCACCATTCGTCATGCAACAGCACTAGTTGCAGAGGGTCCAAACTTTTTGACATATTAGGGGCAGGATTGTTATTGGAATGGAAGGGCATGCTTATTCGAAATTTGGGGTTTGTCCTAGACATGGCAACTTTTGTTATGGCACTTGGTCATTACTTGCATATTTGGTGGCTTCATGGCATGGCATTTCATCTTGTAGATGCAATCCTATTTTTAAATATACGTGCATTGCTTGGTGCCATTATAAATCGCATAAAAGGATTTGTCAGGTTACGAATAGCTCTAGGGGCACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTACAAGCATATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCAAAGGCTAAAAGGCTAAACTGTAATCACCTATTTCACCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTAACTGAGATGTATACTTGTCCGACATGTAGAAAGCCACTTTTTGTAGGCCGGATTGAAAATGAAGCAAACTCCAATACAGTGGAAATGTCAAGTGATGAGCAGCTTGCACGTCAAATGAGTGCAGGACTTGATCGGCCAAACACTCCTAGACAAACCATGCCTGCAGGATTTTATCCCAATCAGCCACCGAACTCTCTGGAAGGAGCTCCTTGGAGTGATGCAGGACTGGACTCAGGTTGGTTGCATTCTTGGCCAAGTCAAGGTGTTGATGTGGCTGGTCCATCTACTGCAATTGGGTCGGTTGGATTAGGGAGAGTTCAATTGATGATGAGGCATCTTGCATCAGTTGGAGAAACCTATGCTCATACTGCCCTTGAAGATGCTGCCTGGAGCCTTTGGCCTATTAATCCCTCGCAGGCTTCAGCAAGTGGTTCACCCCTCCCTTCCCCTGGTGGTAGATTGCCTGGAGGCTCTGGTAGTTTACACGTGACGACTGCCTCACGTTCTGCAAATGATGATTTGGAAAGTATACTTGCCATGGCTGACACAGTACGGGAGGTTCTACCTCATATGCCTGATGAGTTAATTTTCCAGGAGTTGCAGCGGACAAATTCAGTCACAGTTGCTGTGAATAATCTTCTCCAAATGTGA 1977 0.4259 MKKKNRGRRSFEQRGPELRKNTCRRYRHTFLPDRMRIPIFNIFCSEFSLDKLKSEILPHWNNGSHVSELLLGSYTTIGLLANFMINVFILLNLCIKTLFFSELCPSEVRKLVERLINYVIYKVLVTEDHGQCNRSLDIWIVVSVEKLLIFVTNLNMLIFMLHGFIAFLLLVGKEVEAVKEDKNMGAMQWERYMLPNRDRMEKKFCLEMFQALVRDRLEQLNASPSATPWTYFRVYSALLLVFLVDVFWICLCLVIYKTHRSSLFLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHSSCNSTSCRGSKLFDILGAGLLLEWKGMLIRNLGFVLDMATFVMALGHYLHIWWLHGMAFHLVDAILFLNIRALLGAIINRIKGFVRLRIALGALHAALPDATTEELQAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRIENEANSNTVEMSSDEQLARQMSAGLDRPNTPRQTMPAGFYPNQPPNSLEGAPWSDAGLDSGWLHSWPSQGVDVAGPSTAIGSVGLGRVQLMMRHLASVGETYAHTALEDAAWSLWPINPSQASASGSPLPSPGGRLPGGSGSLHVTTASRSANDDLESILAMADTVREVLPHMPDELIFQELQRTNSVTVAVNNLLQM 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2396 658 ProSiteProfiles Zinc finger RING-type profile. 410 452 IPR001841 -
Bisa02g2396 658 Gene3D - 617 657 - -
Bisa02g2396 658 Pfam Ring finger domain 408 452 IPR001841 -
Bisa02g2396 658 ProSiteProfiles CUE domain profile. 618 658 IPR003892 GO:0043130
Bisa02g2396 658 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 205 658 - -
Bisa02g2396 658 CDD RING-H2_AMFR 408 455 - -
Bisa02g2396 658 SUPERFAMILY RING/U-box 396 457 - -
Bisa02g2396 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 460 IPR013083 -
Bisa02g2396 658 SMART ring_2 410 451 IPR001841 -
Bisa02g2396 658 MobiDBLite consensus disorder prediction 581 606 - -
Bisa02g2396 658 FunFam E3 ubiquitin protein ligase RIN2 383 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2396 Bisa-ChrBisa02 59190583 59207831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2396 212 452 C3H Transcription Factor Family AT3G16090 28.571 1.11e-22 100