Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2374 ATGGAAGGCGTGCCTGCGCCCTCTGTTTCCAATGAACGAGTCGCTTACAAGCTCAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTGCCAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTGTTCTTCATTACAAGAACGCTCAGCGGATTTTTATTGAAGCCAATTCAACTAGTGTGCCTTCCTTCATCACTGCCAGTGAACAAGCAAAGGTTAATTCTTATCGTCAAAAAATATCAAAATGGCAGGGTCAAGTTTCTGAGAGGTTACAGATTCTATCTAAACGAGCAGGTAGCTCATCAACTAATCAGAAAACGTCAACTCATGGACAAATTGCTCCAGTTCCATTTAAACCATCAAATGCTAGAAAAAATGTGTTGCAAAAAAATCCTCAAAGAGTGAGTCAGACGGGTAATTATGTAAGCCTGAAATCTAGTCAAGCATCTGGTGGAAATTATGATGCAAAATTAATTGAAATGATTAACACTGCCATAGTTGATAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCTGGTCTTGAGAAGGCAAAGCAAGCTTTAATGGAAATGGTTATTTTGCCTACTAAGAGAAGAGACTTGTTCACGGGTCTCCGAAGGCCGTCTAGAGGTTTGCTTCTCTTTGGTCCGCCCGGCAATGGAAAAACCATGCTTGCCAAAGCAGTGGCATCAGAATCAGAAGCGACATTTTTTAATGTATCTGCAGCTTCCTTGACATCAAAATGGGTAGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATTTCCAGGCAACCATCTGTGATTTTCATTGATGAGATTGATAGTATTATGTCAACAAGATTGGCTAGTGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTAATTGTCATTGGTGCTACCAATAAGCCACAAGAATTGGATGATGCAGTTCTTCGGAGACTGGTGAAAAGAATCTATGTACCTTTACCAGATGACAATGTTCGAAGACTTTTACTGAAACACAAACTCAAGGGTCAAGCGTACTCCCTACCTAGTAGAGATCTAGAAAGGCTTGTAAAAGAGACAGAAGGATATTCTGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCAGCAATGATGCCCATTAGAGAGCTGGGTTCTGACATTCTAACTGTTAACGCGAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAATGCAATGGATGTGGTTAGACCCAGTTTAAACAAAAACAAGTGGAAAGAGCTTGAGCGTTGGAATGAGGAGTTTGGCTCAAAGTGA 1350 0.4141 MEGVPAPSVSNERVAYKLKGYFDLAKEEIAKAVRAEEWGLIDDAVLHYKNAQRIFIEANSTSVPSFITASEQAKVNSYRQKISKWQGQVSERLQILSKRAGSSSTNQKTSTHGQIAPVPFKPSNARKNVLQKNPQRVSQTGNYVSLKSSQASGGNYDAKLIEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPSRGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLASENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDDNVRRLLLKHKLKGQAYSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGSDILTVNANQVRGLRYEDFKNAMDVVRPSLNKNKWKELERWNEEFGSK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2374 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 446 IPR027417 -
Bisa02g2374 449 PANTHER AAA DOMAIN-CONTAINING 71 448 - -
Bisa02g2374 449 MobiDBLite consensus disorder prediction 99 123 - -
Bisa02g2374 449 CDD MIT_spastin 18 96 - -
Bisa02g2374 449 Gene3D - 345 427 - -
Bisa02g2374 449 FunFam Spastin, putative 173 357 - -
Bisa02g2374 449 FunFam AAA-type ATPase family protein 11 100 - -
Bisa02g2374 449 SMART AAA_5 210 346 IPR003593 GO:0016887
Bisa02g2374 449 Pfam ATPase family associated with various cellular activities (AAA) 214 344 IPR003959 GO:0005524|GO:0016887
Bisa02g2374 449 FunFam AAA-type ATPase family protein 345 427 - -
Bisa02g2374 449 Gene3D - 10 100 - -
Bisa02g2374 449 ProSitePatterns AAA-protein family signature. 316 335 IPR003960 GO:0005524|GO:0016887
Bisa02g2374 449 Pfam AAA+ lid domain 369 400 IPR041569 -
Bisa02g2374 449 MobiDBLite consensus disorder prediction 99 117 - -
Bisa02g2374 449 SMART smart 18 95 IPR007330 -
Bisa02g2374 449 Gene3D - 173 443 IPR027417 -
Bisa02g2374 449 CDD RecA-like_spastin 179 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2374 Bisa-ChrBisa02 57748324 57768218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2374 173 399 Calmodulin-binding Proteins AT3G56690 42.797 3.22e-47 172