LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2372	ATGGTTTCCCAAAATCAACCCGAAGTACACAATCCAAAGAGGCAATGGTCCTTGCGAGACTTCGAGATCGGAAAACCCCTTGGAAAAGGGAAATTCGGTAGAGTCTACGTTGCTAGAGAAGTCAAGAGCAAATATATTGTGGCATTGAAGGTTATCTTTAAGGAACAAATAGAAAAGTATAGGATTCATCATCAACTTAGGAGAGAGATGGAGATCCAGACCAGTCTTCACCACCCAAACATCCTACGTCTCTATGGTTGGTTTCATGATGCTGAACGTGTCTTCTTGATACTTGAATATGCTCATAATGGTGAACTTTACAAGGAGCTTAGAAAAAAGGGTCATCTCTCTGAAAAGCAAGCAGCCACGTACATATTGAGCCTCACAAAGGCGTTGGCATACTGTCACGAGAAGCATGTAATTCATAGGGATATTAAGCCTGAGAATTTGTTACTTGACCATGAGGGTCGGCTTAAAATTGCAGACTTTGGTTGGTCTGTACAGTCAAGAAATAAGAGAAATACCATGTGTGGAACATTGGATTATTTAGCACCAGAAATGGTCCAAAACAAAGAACATGATTTTGCAGTTGATAACTGGACTTTGGGTATACTCTGTTATGAGTTCCTCTATGGCGCTCCTCCATTTGAGGCTGAGAGTCAAGTTGATACATTTAAAAGGATAGTAAAGATTGACCTAAACTTCCCCTCTTCGCCTTTTGTTTCTTCAGACGCCAAAAATCTGATTGGTCGGCTGTTGGTGAAAGAATCCTCAAGAAGGCTATCACTTCAGAAGATAATGGAGCATCCTTGGATACTGAAGAATGCTGATCCCACGGGGGAACATCTACCTCAACTAATAATTCAGGAGCAAAAGGATGTTGACAGCAAAGAAGAGAACAAAGATAGGCTGGCTGCACCATGCGAGACAATCTCCAAGGCAGTGTTGAACGAGAAGGAAAGAGAAGCGAGGTCTGGAGCATATTACAGGACAAAATGGGAATGGCGCTTCACATGGCCGTGA	1023	0.4233	MVSQNQPEVHNPKRQWSLRDFEIGKPLGKGKFGRVYVAREVKSKYIVALKVIFKEQIEKYRIHHQLRREMEIQTSLHHPNILRLYGWFHDAERVFLILEYAHNGELYKELRKKGHLSEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRNKRNTMCGTLDYLAPEMVQNKEHDFAVDNWTLGILCYEFLYGAPPFEAESQVDTFKRIVKIDLNFPSSPFVSSDAKNLIGRLLVKESSRRLSLQKIMEHPWILKNADPTGEHLPQLIIQEQKDVDSKEENKDRLAAPCETISKAVLNEKEREARSGAYYRTKWEWRFTWP	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2372	340	ProSiteProfiles	Protein kinase domain profile.	21	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2372	340	SMART	serkin_6	21	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2372	340	FunFam	Serine/threonine-protein kinase ark1	13	284	-	-
	Bisa02g2372	340	FunFam	Aurora kinase A	13	104	-	-
	Bisa02g2372	340	Pfam	Protein kinase domain	21	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2372	340	ProSitePatterns	Protein kinases ATP-binding region signature.	27	54	IPR017441	GO:0005524
	Bisa02g2372	340	Gene3D	Transferase(Phosphotransferase) domain 1	105	333	-	-
	Bisa02g2372	340	CDD	STKc_Aurora	20	273	-	-
	Bisa02g2372	340	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468
	Bisa02g2372	340	SUPERFAMILY	Protein kinase-like (PK-like)	11	283	IPR011009	-
	Bisa02g2372	340	Gene3D	Phosphorylase Kinase; domain 1	9	104	-	-
	Bisa02g2372	340	PANTHER	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	5	282	IPR030616	GO:0004672

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2372	Bisa-ChrBisa02	57734770	57739941	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2372	21	278	CBL-interacting serine-threonine protein kinases	AT5G10930	39.623	7.53e-61	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Aur	Bisa02g2372		Pkinase	3.1e-74	CL0016