LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2312	ATGTCACTCAACATGAAAACCCTAACCCAGGCATTGGCGAAAACCGCCGCGGCCATTGAAAAGACGGTTCATACCACTGTGCAGGAGGTCACGGGACCCAAGCCACTCCAGGACTACGAGCTTCTTGACCAGATCGGCTCTGCCGGGCCTGGTCTCGCATGGAGGTTGTACTCGGCCAGGGCGCGTGATCAGACGCGGCAGCACCAGTACCCAGTTGTTTGCGTCTGGGTATTGGACAAGCGGGCTCTTTCGGAAGCACGAACGCGTGCTGGGCTGACCAAGGCGGCTGAGGATTCTTTTTTGGATGTGATTCGGGCGGATGCGGGTAAACTGGTGCGGCTGAGGCATCCAGGGGTGGTGCATGTGGTGCAGGCGCTGGATGAGAGCAAGAATGCTATGGCAATGGTGACCGAACCCTTGTTTGCGTCTGTGGCTAATACTCTTGGGAATGTGGAGAATGTTGCTGTTGTTCCCAAGGAGCTCAGGGGAATGGAAATGGGACTGTTGGAGGTGAAGCATGGTTTACTTCAGGTGGCAGAATCCTTGGACTTTCTCCACAACCATGCCCATCTTATCCATCTAGCTATATCACCTGAGAATATTCTGATCACCTCGAGTGGAGCTTGGAAACTTGGTGGATTCAGTTTTGCAATTTCTGCAGCTCAGACCTCTGGTGACTCAGCCAATCTGCAAGCTTTCCATTATGCTGAATATGATGTTGAGGACTCCATTCTGCCACTCCAGCCATCACTTAACTATACTGCACCTGAACTGGTGCGAAGTTCTGCATCTTCAGCTGGATGGTCCTCTGATATTTTCAGTTTTGGATGCCTAGCCTATCATTTAATCACTCGCAAACCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATGAATACTTTGACTTACTTATCCAGTGATGCTTTCTCATCCATTCCACCGGAATTGGTTCCTGACTTGCAAAGGATGCTGTCTCCAAACCAGTCTTCCAGGCCAACTGCAATGGATTTTACAGGCTCCCCATTTTTCCGGAATGACACTAGGTTGCGTGCTCTGCGCTTCCTTGATCACATGCTTGAACGAGATAACATGCAGAAGTCAGAGTTCTTGAAAGCATTATCAGATATGTGGAAAGATTTTGATTACCGTGTATTGCGGTACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTTGTAATGCAGCCAATAATTCTGCCAATGGTTCTCACCATTGCAGAGTCTCAGGATATAAGAGATTTCGAGCAATCAACACTTCCATCTCTTGTTCCTGTCCTGAGTGCAGCCACAGGTGAGACACTGTTGCTACTTGTGAAGCACTCAGATCTCATAATAAACAAGACTAGCCAAGAGAGTTTAGTAACTCATATTCTTCCCATGATTGTTCGGGCCTTTGACGATACTGATGCCCGCATACAAGAAGAGGTTCTGAAGAAATCAGTTTCCCTTGCCAGGCAACTTGATGCCCAGCTGATCAAACAAGTTGTCCTGCCTCGTGTTCATGGCTTAGCACTTAAAACGACAATTGCTGCGGTTCGAGTCAATGCTTTGTTGTGCTTTGGTGACTTTGTGACCTGTCTTGATAAGCATGCAGTCATGGACATCTTGCAAACTATTCAGCGTTGTACTGCTGTTGACCATTCTCCTCCTACCCTTATGTGTACCCTTGGGGTTGCAAACTCTATTCTTAAGCGGTATGGAATAGAATTTGTTGCAGAGCATGTTCTTCCATTGCTTATGCCCCTTCTGACGGTTCAGCAACTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATGTGCTCAGTAAAATAGAAGAGAAGAGAGGAGTGGTTGTGACTGATTCTGAAATCCCAGAGGTGAAACCATCTCATTCGGTTAATGGACATCAAATGGAAGCATTGATCAAAACAAGTGGCACTGTTGCTTCAATAAAAAGTATTTCCTCTTGGGATGAGGATTGGGTTACCTCAACAAAAGGAGCTTCCACTCCTGTCCAGAATTCTATCAGCACATCTAGTAAATCTGTGCAGCAACCTTTCCCCTTATCATCTCTTCAGCAGACAACTATGTCATGCCCCTCGGATGATGTGCAGTGGCCTCCTACTCTTGCATCTTCTGCCATTACCTCTCAATTTGGTGAAACTGAAAAGCAAATGAAGGCACCGGAAACCTCATCTATGTCTAGTTTCGAAGATATTGATCCTTTTTCTGACTGGCCTCCTCATTCTAGTGGCTCATTAGGTGGACCTAGAAATTCCAACAATGGAACTTTAGGATCGCGACTAAGCAAATCTGAGTATAATTCAATGTCAGGCAGTTCAAACAGTATGAATTTTAAAACCAATAGCAGTTGGTCTGTTAATTCCCAAAGTCCTGCAGAATCAGCCGGATTGAGCCTAAATGCTAGTTCATCCAACAGCAGCCTGAATACTGGTCTTAATTCTCTAAATTCTCTGGGTTTTCTAGAACAGAATCAGGGATTCCCAGCTTTGAATGCTTCACGTCCTGAAAGTAAGTCAAAAGATCTTGGATCCATCTTTGCTTCGAACAAGGATGACCCGATAGCACCTAAACTTGCACCACCACCTTCAACTGCGGTGGGTAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGCAAGGAATTACTTCAACCAATCAGTCGACCAATAGCAAGTCACATACTGAGCAACCACCCCTTTTGGATTTGTTGGGGTAA	2751	0.4609	MSLNMKTLTQALAKTAAAIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGLAWRLYSARARDQTRQHQYPVVCVWVLDKRALSEARTRAGLTKAAEDSFLDVIRADAGKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNVENVAVVPKELRGMEMGLLEVKHGLLQVAESLDFLHNHAHLIHLAISPENILITSSGAWKLGGFSFAISAAQTSGDSANLQAFHYAEYDVEDSILPLQPSLNYTAPELVRSSASSAGWSSDIFSFGCLAYHLITRKPLFDCHNNVKMYMNTLTYLSSDAFSSIPPELVPDLQRMLSPNQSSRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDYRVLRYKVLPPLCAELRNVVMQPIILPMVLTIAESQDIRDFEQSTLPSLVPVLSAATGETLLLLVKHSDLIINKTSQESLVTHILPMIVRAFDDTDARIQEEVLKKSVSLARQLDAQLIKQVVLPRVHGLALKTTIAAVRVNALLCFGDFVTCLDKHAVMDILQTIQRCTAVDHSPPTLMCTLGVANSILKRYGIEFVAEHVLPLLMPLLTVQQLNVQQFAKYMLFVKDVLSKIEEKRGVVVTDSEIPEVKPSHSVNGHQMEALIKTSGTVASIKSISSWDEDWVTSTKGASTPVQNSISTSSKSVQQPFPLSSLQQTTMSCPSDDVQWPPTLASSAITSQFGETEKQMKAPETSSMSSFEDIDPFSDWPPHSSGSLGGPRNSNNGTLGSRLSKSEYNSMSGSSNSMNFKTNSSWSVNSQSPAESAGLSLNASSSNSSLNTGLNSLNSLGFLEQNQGFPALNASRPESKSKDLGSIFASNKDDPIAPKLAPPPSTAVGRGRGRGRGRGQGITSTNQSTNSKSHTEQPPLLDLLG	916

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2312	916	SUPERFAMILY	ARM repeat	312	607	IPR016024	-
	Bisa02g2312	916	SUPERFAMILY	Protein kinase-like (PK-like)	34	348	IPR011009	-
	Bisa02g2312	916	MobiDBLite	consensus disorder prediction	669	744	-	-
	Bisa02g2312	916	PANTHER	SCY1-RELATED S/T PROTEIN KINASE-LIKE	36	909	-	-
	Bisa02g2312	916	ProSiteProfiles	Protein kinase domain profile.	39	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2312	916	SMART	serkin_6	39	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2312	916	MobiDBLite	consensus disorder prediction	669	820	-	-
	Bisa02g2312	916	Gene3D	-	349	621	IPR011989	-
	Bisa02g2312	916	Pfam	Protein kinase domain	108	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2312	916	CDD	PK_SCY1_like	45	346	-	-
	Bisa02g2312	916	Gene3D	Transferase(Phosphotransferase) domain 1	104	348	-	-
	Bisa02g2312	916	MobiDBLite	consensus disorder prediction	842	916	-	-
	Bisa02g2312	916	MobiDBLite	consensus disorder prediction	890	908	-	-
	Bisa02g2312	916	MobiDBLite	consensus disorder prediction	758	820	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2312	Bisa-ChrBisa02	55715794	55763399	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2312	104	349	CBL-interacting serine-threonine protein kinases	AT2G26980	22.530	2.49e-08	55.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	SCY1_SCYL2	Bisa02g2312		Pkinase	2.2e-22	CL0016