Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2279 ATGTCAACCAAAGGCATGTGGAGGGTTGGGTTTGAAATCGATGAGAAGCATGAACATGGCTATGTTGATGAAGTTGGGTTGGGGTTTGCTGAAATGGAGCTCAGAAGAGAAGAGAGTAGAAAGAAAGTGACGAGTATACAAATGGACAAGGAAAATGGGATTGGGAAGCGATTCTTTCTTACCAGGCTTTTTGTCCCCAAAGATGTCGTTTCGTCCTCGTTCATGGTGGTTTTTTATGGGTTATATTATATAAGAAAGAAAGCTAGGATCGTAGGGTCTTTGTGGTACCTTAAGAAAGAGAAGAGAAAGATGGGGAGGGGAAAGATCGAGATCAAGAGGATAGAGAACACAACGAACAGGCAGGTGACTTTCTGCAAGAGAAGGAATGGACTTCTGAAGAAAGCTTATGAGCTCTCAGTGCTTTGTGATGCTGAGGTGTCCCTCATCGTCTTCTCAAGCCGCGGACGCCTCTATGAGTACTCCAACAACAACATAAGGTCAACTATAGAGAGGTACAAAAAGGCATGTTCAGATCATTCAAGTACGAGTTCAACGACTGAAATCAACGCTCAGTATTATCAGCAAGAATCTGCGAAGCTACGACAGCAGATACAGATGCTGCAAAATTCAAACAGGCACTTGATGGGTGATGCGTTGAGCACACTGACTGTGAAGGAGCTTAAGCAGCTGGAGAACAGACTTGAAAGAGGAATCACTAGGATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATTGAGTATCTGCAGAAAAGGGAGATTGAACTTGAAAATGAAAACCTTTGCATTCGGACTAAGATAGCAGAAATAGAGAGGGTTCAGGAAGCAAACATGGTTTCAGGGCCAGAGCTGAATGCCATACAGGCATTAGCTTCTCGAAATTTCTTCACTCCAAACATGATTGAAGCTGCTACTTCTTACCCTCAATCCGACAAGAAGATTCTTCATCTTGGGTAA 978 0.4346 MSTKGMWRVGFEIDEKHEHGYVDEVGLGFAEMELRREESRKKVTSIQMDKENGIGKRFFLTRLFVPKDVVSSSFMVVFYGLYYIRKKARIVGSLWYLKKEKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSSTSSTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENLCIRTKIAEIERVQEANMVSGPELNAIQALASRNFFTPNMIEAATSYPQSDKKILHLG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2279 325 Gene3D - 116 213 IPR036879 GO:0003677|GO:0046983
Bisa02g2279 325 PRINTS MADS domain signature 141 162 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 PRINTS MADS domain signature 126 141 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 PRINTS MADS domain signature 106 126 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 Coils Coil 190 210 - -
Bisa02g2279 325 FunFam agamous-like MADS-box protein AGL11 116 199 - -
Bisa02g2279 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 113 160 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 SUPERFAMILY SRF-like 105 180 IPR036879 GO:0003677|GO:0046983
Bisa02g2279 325 Pfam K-box region 188 274 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g2279 325 CDD MADS_MEF2_like 105 179 IPR033896 GO:0000977|GO:0045944
Bisa02g2279 325 ProSitePatterns MADS-box domain signature. 106 160 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 ProSiteProfiles K-box domain profile. 190 280 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g2279 325 SMART madsneu2 104 163 IPR002100 GO:0003677|GO:0046983
Bisa02g2279 325 Coils Coil 227 266 - -
Bisa02g2279 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 104 258 - -
Bisa02g2279 325 ProSiteProfiles MADS-box domain profile. 104 164 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2279 Bisa-ChrBisa02 54523437 54535576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2279 104 325 MADS-box Gene Family AT4G09960 74.783 9.34e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa02g2279 K-box 3.4e-26 No_clan