Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2258 ATGGCTGAGGAGACCCAGAAACCATCTGAGGAAGTTGTGGCAGTGGCTGAGACAGAGGCCAAAACGGAGCCCGAGAAACCCGTTAGTGAAACGGAGCCTCAGAAGCCCAGCGATGAGAAGAAACCCGATGAGCCGGAGGTTGCAGAGAAGCCGGCCGCTGAAGAAGTCGTCGAGGTGCAGAAGCCCAAGATTACCCAATCGGTTTCTTTCAAGGAGGAGAGCAACGTGGTCGGCGAGCTCCCCGAGGCCCAGAAGAAGGCTCTCGATGAGCTGAAGCACCTTATTCAAGACGCGCTCAATAAGCACGAGTTCACCGCTCCCCCGCCGCCACCGCCACCGCCACCGCCTGTCAAGGAGGAGGAGAAGAAGGCCACGGAGGAATTGAAGGCCGAGGAGGCTGTGACGGCGGAGGTGAAGAAGGAGGAAGAGGCGGCTGAGACGAAGAAGGAGGAGGAGAAACCGGCTCCAGCTGCTGAAGAGGTCAAAGTTGAAGAGAAAATCGAAGCAGAGCCTTCTAAGAAGGTGGGTGATGTTGTTGAAGAGCCACCCAAGGCTGAAGCCGAGACTGTGAAAGAAGAGACAAAGGAGGAAAAGCCTACGCCTGAAGCTGAGACTGTGGTTGTTGCAGAGGTTGTGGAAAAAGTTTCTATTCAGGAAGTAGATGGTGCTAAGACAGTGGAAGCTATCGAGGAGACCGTAGTTTCAGCCTCTGAGGAACCTGCACCTTCAGCAGAGGAGAAGGCGCCGGAGGAGGCTACGCCACCTCCGCCTCCGCCTCCGCCGGAGGAAGTCTCAATCTGGGGAATTCCCCTGCTTGCGGACGAGAGGAGTGATGTGATACTGCTGAAATTCCTCAGAGCAAGGGATTTCAAGGTCAAAGAAGCATTCACGATGCTGAAGAACACCGTTCGTTGGCGAAAGGAATTCGGGATCGACGCTCTTGTTGAAGAAGATCTCGGGACTGATTGGGACAAGGTGGTGTTCAGTCATGGGTGTGACAAGGAAGGCCACCCTGTTTGCTACAACGTGTTTGGTGAGTTTGAGAACAAGGAGCTGTATCAGAACACGTTTTCTGATGAGGAGAAGCGCCAGAAGTTCATCAAATGGAGGATTCAGTTTCTGGAGAAGAGTGTCAGAAAATTTGATTACTCTCCCACTGGTCTCTGTACTATTGTGCAGGTCAATGATCTTAAGAATTCCCCTGGATTAGGTAAGAGGGATCTCAGGCAGGCCACTAATCAAGCCCTTCAGTTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAGCAGATTTTTATCAACGTTCCTTGGTGGTACCTTGCCTTTTCAAGGATGATCAGTCCTTTCCTGACACAGAGGACCAAAAGCAAGTTCGTATTTGCTGGCCCATCCAAATCTGCCGAGACCCTTTTCAAATATGTGGCTCCTGAGCAAGTACCTGTCCAATACGGTGGATTGAGCAGGGAGGGTGACACTGAATTCACAACTGCTGATCCTGTTACTGAGGTCATCATTAAACCAGCCACAAAACATGCTGTTGAGTTCCCAGTTTCTGAGAGTTGCAATCTGGTTTGGGAAATCAGAGTTGTGGGATGGGATGTGAGCTATGGGGCTGAATTTGTGCCTGATGGTGAGGATAAATACACAGTGATAGTACAGAAGAGCAGGAAAATTACTGTTGTTGATGAAACAGTAATTAGTAACAGCTTCAAAATTGGGGAACCTGGTAAGGTTGTGCTCACCATTGATAACCATACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAAGCCATCTCTGAGTGA 1812 0.5044 MAEETQKPSEEVVAVAETEAKTEPEKPVSETEPQKPSDEKKPDEPEVAEKPAAEEVVEVQKPKITQSVSFKEESNVVGELPEAQKKALDELKHLIQDALNKHEFTAPPPPPPPPPPVKEEEKKATEELKAEEAVTAEVKKEEEAAETKKEEEKPAPAAEEVKVEEKIEAEPSKKVGDVVEEPPKAEAETVKEETKEEKPTPEAETVVVAEVVEKVSIQEVDGAKTVEAIEETVVSASEEPAPSAEEKAPEEATPPPPPPPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMLKNTVRWRKEFGIDALVEEDLGTDWDKVVFSHGCDKEGHPVCYNVFGEFENKELYQNTFSDEEKRQKFIKWRIQFLEKSVRKFDYSPTGLCTIVQVNDLKNSPGLGKRDLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFVFAGPSKSAETLFKYVAPEQVPVQYGGLSREGDTEFTTADPVTEVIIKPATKHAVEFPVSESCNLVWEIRVVGWDVSYGAEFVPDGEDKYTVIVQKSRKITVVDETVISNSFKIGEPGKVVLTIDNHTSKKKKLLYRSKTKAISE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2258 603 PANTHER PATELLIN-1 149 600 IPR044834 GO:0008289
Bisa02g2258 603 Coils Coil 121 151 - -
Bisa02g2258 603 Gene3D GOLD domain 505 598 - -
Bisa02g2258 603 PRINTS Cellular retinaldehyde-binding protein signature 280 302 - -
Bisa02g2258 603 PRINTS Cellular retinaldehyde-binding protein signature 443 462 - -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 233 264 - -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 116 203 - -
Bisa02g2258 603 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 501 595 IPR036598 -
Bisa02g2258 603 CDD SEC14 322 486 IPR001251 -
Bisa02g2258 603 ProSiteProfiles GOLD domain profile. 467 598 IPR009038 -
Bisa02g2258 603 Pfam CRAL/TRIO, N-terminal domain 262 301 IPR011074 -
Bisa02g2258 603 SUPERFAMILY CRAL/TRIO domain 326 487 IPR036865 -
Bisa02g2258 603 SUPERFAMILY CRAL/TRIO N-terminal domain 68 318 IPR036273 -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 83 99 - -
Bisa02g2258 603 Pfam CRAL/TRIO domain 325 485 IPR001251 -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 14 57 - -
Bisa02g2258 603 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 316 491 IPR001251 -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 1 203 - -
Bisa02g2258 603 MobiDBLite consensus disorder prediction 249 264 - -
Bisa02g2258 603 SMART sec14_4 320 488 IPR001251 -
Bisa02g2258 603 Gene3D - 267 504 IPR036865 -
Bisa02g2258 603 SMART CRAL_TRIO_N_2 277 302 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2258 Bisa-ChrBisa02 53520000 53523267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2258 281 480 Acyl Lipid Metabolism Gene Families AT1G55840 29.767 8.50e-09 55.5