Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2243 ATGGCCCAGCAGTCATCCAGGCTTCAGCGTTTGCTGACCCTTTTGGACACTGGATCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATAGCAAAATCTCATCCTCAAGATCTAACCAGTCTTTTAAAGAAGGTTTCTCAGTATCTTCGTAGTAAAAGTTGGGACACAAGAGTTGCTGCTGCTCATGCAATTGGGGCTATTGCTGAGAATGTTAAGCACATATGTTTAACTGAACTTATTGCTTCTATTGAAATTAAAATGTCCGAGGCTGGGATATCTGGAAGTGTTGAAGATTTGTGTGCATGGCCTTACTTACAATCTAAAATTATAGGAAGCTCATTTAGAAGTTTTGATATCAATAAGGTTCTTGAATTTGGCGCTTTAGTAGCATCAGGAGGACAGGAGTATGATATAGGAAGTGATAACGTAAAGAATCCAAAGGAGCGATTGGCTCGCCAGAAGCAAAATCTTCGTCGCCGTTTAGGTTTGGATGTATGTGAACAATTTATGGATATCAGTGATGTTATTGGAGATGAAGATCTTATGGCACAGAAATCTGATTTGCATCTAAATGGAATAGATCATAGAGTTTTCACATCTCATTCTGTGCATAACATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGCCAAATCAAAGTGGCCAAGTGCAAGAGAGTTAAATCTTCTAAAACGTAGAGCAAAAACAAACTCAAAAGACCAAACAAAAAACTGGTGTGATGATGGAAGCACCGAGGCTTCATGTGCTCAAAATATGACTTCTAAAGGCACATGTCCTGATTCAGTACGTTACAATAAGGTCTTTGAGGATACTAATCATGATGATGATGGCTTTGAGCATGATGGGGATGGACGATGGCCTTTTCACACTTTTGTTGAGCAACTTATACTTGATATGTTTGATCCTGTTTGGGAGGTTCGCCATGGTAGTGTAATGGCATTGAGAGAGATTTTAACTCATCAAGGCGCTTCTGCTGGTGTATTGAAACCTGACTCATCCATGGGTCGGGCGCTATTTGCTGAATCAGAAGATAAAAACATATCAAATGTATTGAAGGATAAGAACACATCTAATGTACTAAAGAGAGAGAGGGAGATTGATTTAAATATGCAGGTTTCAGTGGATGAGTTTGAGTCAAATTTGAAGAGACCAAAGCTCGAAGATTTTTCATCATCAACCTCCATGAATAGCATGAATACTTGCAGCAATGAAGCTGATGTTGAAATCGGCATTAGTGCTGAAACCTGTGGATTCCATTTATCTCTGGATTGCAAGGATGGGCAATACAATGGCAGTTCTGTTAACATGAATCAAGAATTCTACTCAGAGAGCTGTTATTCATTTGAGGAACCAACTAATATAGCAGACATGAAGGACTATTATGATGGTGATAAGAATCCCTCTGGAAATCTTATTATGATAGGAAATTCTCCTCAGAATTCTCAGCTGATGAAATTGGTTGAAGTGGCTAGAAATTCATGGCTTCGAAACTGTGATTTTCTTCAAGATTGTGTAATACGCTTGTTGTGTGTGTTGTCACTAGAACGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCCCCAGTGCGGGAAACTTGTGCACAAGCGTTAGGGGCTTCTTTTAAGTACATGCATCCTGCCTTAGTTAATGAAACATTAAATATATTGCTGAAATTGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGCCTTTTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTCCTGACTTGCTTGGACGTGTTCTTCCAGCATGTAAATCTGGTTTGGAAGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCCTTGATACCAGCTGCAGCTGCAATTGTTTCCTTGCAAGGCCAAACATTGCACTCAATTGTAATGCTCTTGTGGGATATACTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATTTGCTGGCAGAAATCTACTCTCAGGAGATGGTCACAAAAATGTATAAAGTATTGAAATTGGAAGACACAGGAGTAGGTGATCTAAATGGATTATGTAGTGATGGTAATGATGGAGATGCTAGTATGCTTTCAACATTGGCACCACGCTTGTGGCCCTTTATGAGGCATAGTATAACATCTGTCCGTTACTCAGCAATTTGCACATTGGAGAGGCTGCTTGAAGCTGGATATAAGCGAAGCAAGTCTGAGCAATTTTGCACTTCATTTTGGCCCCCTTTTATACTGGGTGATACACTTCGAATTGTCTTTCAGAATCTTCTACTAGAAACAAATGAGGAGATTTTGCAGTGCTCAGAGAGAGTTTGGAGGCTCCTTGTTCAGAGTCCAGCGGAGGACTTGAACACAGCAGCAAGGGCTTACATGACTTCTTGGATTGAACTTGCATTTACTCCATTTGGTTCAGAGCTTGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGGAAGAGTCAATTTAGAGCTGCAGCCAAAATGAGAGCTGCAAAGGTTGAATATGAATCTGGTGGAGATTTTGGTCTGGTTTCTACAAAAGGAGCTATTCCACTAGAAAGAAATGGAGATGTTGTTATGGATTCAGTGAATATGGTGGTTGGTGCTGATGTAGACTCATCAATTACTCATACTCGAGTGGTTACAGCAACTGCATTGGGAATATTTGCTTCTAAGCTGCCAGAGGGTTCTATCAAATATGTGATTGATCCATTGTGGAGTGCTCTTACCTCTTTGTCAGGCGTCCAGCGCCAGGTTGCATCCATGGTACTTATTTCATGGTTCAAGGAGATTAAAACTGGGAAATTCTCTGGAGACCTTAATGGTATTCCTGGTGTACCTAGTTATTTCAAAGATTGGTTGCTGGACTTATTGGCATGTTCTGACCCTGCATTCCCAACAAAAGATTCACACCTTCCTTATTCTGAGCTTTCAAGAACATATGCCAAGATGCATAGTGAGGCTGGTCAATTGCTAAATGCTATGAAGTCGTCTAGTATGTTTAATGAGCCATTGTCAACAACAAAATTTGAGTTGGAGGGCATGAGTGTGGATAGTGCAATTAATTTTGCATCAAAAGTTCCGGCATTTTGTAATGATAGTGCTGGGAATGAGTCCTCCGAAAGGAATGTTAAGGATGATATAGAGTCATTAAAACAGAGGCTCTTGACAACTTCAGGCTATTTGAAATGTGTTCAGAGCAATTTGCATGTTACAGTCTCATCTGCAGTTGCGGCTGCAGTTGTCTGGATGTCAGAATTTCCCCCTCGACTCACCCCAATTATTTTGCCTTTAATGGCTTCGATCAAACGAGAGCAGGAGGAAATACTGCAAATAAAGTCAGCTGAGGCACTTGCTGAGCTTATTTATCATTGTGTTGCACGCAGACCTTGCCCCAATGACAAGTTAATTAAAAATATATGTGCTTTGACTTGCATGGATCCCTCTGAGACACCTCAAGCTAAATTTGTCAGCTCTATTGACAGTATTGACGACCAAGGTCTTCTGTCCTTTGGAACTTCTGTGGGTAAACAGAAGTCAAAGGTCAATGTGCTGACTGGTGAAGATCGATCAAAGGTGGAGGGATTTATTAGTAGACGTGGATCTGAGCACTCCTTGAGGCTTCTATGTGAGAAGTTTGGTGCTTCATTATTTGATAAGCTTCCTAAGTTGTGGGATTGCCTTACTGAGGTGCTTAAGCCAAGCTCTGCTGAATCTCTGGCTTCTGATGAAAAACAAGTCACAATGGCTATTGAGTCTGTCGGTGATCCCCAGATCTTGATCAACAATATCCAGGTAGTACGTTCCATTTCTCCCGTGTTAAGTGACGAGTTGAAGCCAAAACTATTGACACTTCTCCCCTGCATTTTTAAGTGTGTCAAGCACCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCAATGGCCAGGTCAATGACTGTGGAAGTCATGGGAGCAATGGTTGAAAATACTATTCCTATGTTGGCAGATGCATCATCAGTTCATGCTCGGCAAGGTGCTGGCATGCTGGTCAGCTTTCTTGTGCAAGGACTGGGAGGGGAGTTGGTCCCTTATGCTCCTCTACTAGTAGTTCCACTTCTAAAGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTAACCCATAGTTTTGCTGCTCTTGTACCACTTCTTCCTTTAGCGCGAGGCCTTCCTCCACCTGTAGGATTAGGAGAAGGTTTGTCTAGGAATGCCGAAGATGTGCAATTTTTGGAACAACTACTTGACAACTCTCATATTGAAGATTACAAGCTGTGCACTGAACTAAAAGTAACATTGCGAAGGTATCAACAGGAAGGTATGAATTGGTTGGCTTTCTTGAAGCGTTTCAAGCTTCATGGAATATTGTGTGATGACATGGGGCTCGGTAAGACACTTCAAGCATCAGCAATTGTGGCATCTGATATAGTTGAGCATCAAACTTCAAAGGGGAATGAGGATCTTTTGCCATCTTTAATTATTTGCCCATCAACCCTTGTTGGTCATTGGGCCTTTGAGATAGAAAAGTATATTGATACTTCTGTTATATCTACTCTTCAATATGTTGGTTCTGCTCAGGAGCGGATGTGTCTTCGAGATGACATTTGCAAACATAATGTCATCCTAACATCTTATGATGTTGTCCGCAAAGATATTGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCAAAGTCTAAAGTTACTCTTGCTGTAAAGCAGCTGAAATCCCAACACCGCTTGATATTGAGTGGAACCCCTATACAGAATAACATCGTGGACTTGTGGTCTCTTTTGGACTTTCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCAAGCTACTTACGGAAAACCACTCCTAGCAGCGAGAGATCCCAAGTGTTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTCCGCAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAGGACAGATACTGTGATTTGAGCCCTGTACAACTTAAATTGTATGAACAGTTTTCTGGTTCTCATGCAAAAAAAGAAATCTCATCTATTGTCTCAGATAGTGAGTCATCTGCCCAAGAAGGAAGCAGCAGTTCACCTAAAGCATCTGCACATGTTTTCCAGGCACTCCAGTACTTGCTAAAGCTGTGTAGTCATCCCTTACTAGTCACCGGTGAGAAGATTCCAGATTCTCTCTCTGTTGTTCTCTCAGAACTGTTGCCTGCTGGCTCTGACATCATGTCAGAACTACATAAACTGCATCACTCCCCAAAGTTGGTTGCACTTCAGGAGATTCTGGAAGAGTGTGGAATTGGAGTTGATGCTTCAGGTTCTGAGGGTGCCATGAGCACTGGACAACACAGGGTCTTGATATTTGCCCAACATAAGGCGTTTCTGGATATAATTGAAAGAGATTTGTTTCAGACGCACATGAAGAATGTCACATATTTGCGGCTGGATGGGTCGGTTGTGCCAGAGAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCATGCTGCTTACAACCCATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCGGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGATAGAGCACACAGGTTGGGTCAGAAAAATGTTGTTCATGTCCATCGCTTAATAATGCGTGGTACATTGGAAGAAAAAGTTATGAGCCTCCAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATTAATTCGGAGAATGCAAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCATCAGAAACTTCGAAGAAGGGACCTGCTGCCAAGCGTCCGGAGAACAACTCTCATGTGGACAATAAATTCGTTGGTGGCGGAAAGGGCTTAAAAGCTATACTTGGCGGATTGGAGGATCTATGGGACCAATCACAATATGCAGAAGAGTACAATCTGAGTCAATTCTTAGCAAAGCTTAATGGTTAA 6174 0.4189 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKSWDTRVAAAHAIGAIAENVKHICLTELIASIEIKMSEAGISGSVEDLCAWPYLQSKIIGSSFRSFDINKVLEFGALVASGGQEYDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIGDEDLMAQKSDLHLNGIDHRVFTSHSVHNIQKMVANMVPSAKSKWPSARELNLLKRRAKTNSKDQTKNWCDDGSTEASCAQNMTSKGTCPDSVRYNKVFEDTNHDDDGFEHDGDGRWPFHTFVEQLILDMFDPVWEVRHGSVMALREILTHQGASAGVLKPDSSMGRALFAESEDKNISNVLKDKNTSNVLKREREIDLNMQVSVDEFESNLKRPKLEDFSSSTSMNSMNTCSNEADVEIGISAETCGFHLSLDCKDGQYNGSSVNMNQEFYSESCYSFEEPTNIADMKDYYDGDKNPSGNLIMIGNSPQNSQLMKLVEVARNSWLRNCDFLQDCVIRLLCVLSLERFGDYVSDQVVAPVRETCAQALGASFKYMHPALVNETLNILLKLQCRPEWEIRHGSLLGIKYLVAVRQEMLPDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEMVTKMYKVLKLEDTGVGDLNGLCSDGNDGDASMLSTLAPRLWPFMRHSITSVRYSAICTLERLLEAGYKRSKSEQFCTSFWPPFILGDTLRIVFQNLLLETNEEILQCSERVWRLLVQSPAEDLNTAARAYMTSWIELAFTPFGSELDASKMFWPVAFPRKSQFRAAAKMRAAKVEYESGGDFGLVSTKGAIPLERNGDVVMDSVNMVVGADVDSSITHTRVVTATALGIFASKLPEGSIKYVIDPLWSALTSLSGVQRQVASMVLISWFKEIKTGKFSGDLNGIPGVPSYFKDWLLDLLACSDPAFPTKDSHLPYSELSRTYAKMHSEAGQLLNAMKSSSMFNEPLSTTKFELEGMSVDSAINFASKVPAFCNDSAGNESSERNVKDDIESLKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPPRLTPIILPLMASIKREQEEILQIKSAEALAELIYHCVARRPCPNDKLIKNICALTCMDPSETPQAKFVSSIDSIDDQGLLSFGTSVGKQKSKVNVLTGEDRSKVEGFISRRGSEHSLRLLCEKFGASLFDKLPKLWDCLTEVLKPSSAESLASDEKQVTMAIESVGDPQILINNIQVVRSISPVLSDELKPKLLTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTVEVMGAMVENTIPMLADASSVHARQGAGMLVSFLVQGLGGELVPYAPLLVVPLLKCMSDCDQSVRQSVTHSFAALVPLLPLARGLPPPVGLGEGLSRNAEDVQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGMNWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIVEHQTSKGNEDLLPSLIICPSTLVGHWAFEIEKYIDTSVISTLQYVGSAQERMCLRDDICKHNVILTSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKSQHRLILSGTPIQNNIVDLWSLLDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSHAKKEISSIVSDSESSAQEGSSSSPKASAHVFQALQYLLKLCSHPLLVTGEKIPDSLSVVLSELLPAGSDIMSELHKLHHSPKLVALQEILEECGIGVDASGSEGAMSTGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVVPEKRFEIVKAFNSDPTIDVMLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKNVVHVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASSETSKKGPAAKRPENNSHVDNKFVGGGKGLKAILGGLEDLWDQSQYAEEYNLSQFLAKLNG 2057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2243 2057 CDD SF2_C_SNF 1809 1951 - -
Bisa02g2243 2057 CDD DEXHc_Mot1 1462 1694 IPR044078 GO:0005524
Bisa02g2243 2057 Gene3D - 1704 2018 IPR027417 -
Bisa02g2243 2057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1815 1986 IPR001650 -
Bisa02g2243 2057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1474 1644 IPR014001 -
Bisa02g2243 2057 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Bisa02g2243 2057 SMART ultradead3 1458 1655 IPR014001 -
Bisa02g2243 2057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1695 1996 IPR027417 -
Bisa02g2243 2057 Pfam SNF2-related domain 1481 1776 IPR000330 GO:0005524|GO:0140658
Bisa02g2243 2057 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2056 IPR044972 GO:0003677|GO:0016887|GO:0017025
Bisa02g2243 2057 Pfam Domain of unknown function (DUF3535) 789 1246 IPR022707 -
Bisa02g2243 2057 Gene3D - 1433 1693 IPR038718 -
Bisa02g2243 2057 MobiDBLite consensus disorder prediction 1999 2019 - -
Bisa02g2243 2057 FunFam TATA-binding protein-associated factor 172 1704 2020 - -
Bisa02g2243 2057 FunFam TATA-binding protein-associated factor BTAF1 1210 1420 - -
Bisa02g2243 2057 Pfam Helicase conserved C-terminal domain 1838 1940 IPR001650 -
Bisa02g2243 2057 Gene3D - 511 690 IPR011989 -
Bisa02g2243 2057 SUPERFAMILY ARM repeat 6 1501 IPR016024 -
Bisa02g2243 2057 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1432 1693 - -
Bisa02g2243 2057 Gene3D - 4 88 IPR011989 -
Bisa02g2243 2057 Gene3D - 1107 1419 IPR011989 -
Bisa02g2243 2057 SMART helicmild6 1854 1940 IPR001650 -
Bisa02g2243 2057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1444 1694 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2243 Bisa-ChrBisa02 53031447 53097000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2243 1457 1995 RAD5 or RAD16-like Gene Family AT1G02670 26.667 3.19e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa02g2243 DUF3535 7.5e-99 No_clan