LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2224	ATGCGTCTTCAGCTCGCAGGAGTAGTAGCAGTACCAGTTGAAATGAATAGTGGCAGTGCAAGTGGTGGAGTTGGAGGTGGGGGTGGTGGGGCAGCGACGGGGATGATGGGGATGACTAGGTCGCCTTTCACTGTGTCTCAGTGGCAGGAACTTGAGCACCAGGCTCTGATTTTCAAGTACATGGTGGCGGGTCTTCCTGTGCCTCCTGATCTTGTTCTCCCCATTCAGAAGAGCTTGGAGTCCATTTCACAAAGGTTCATTCACCATCCCACCATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCGGGAAGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCAAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACATACCATGACACAGTCATCGACCACTGTGACATCACTGACTGTCACAGGTGGCAGCAGCAGAACTGGAAACATCCAGAACCTTACTGCAAATGCCTTTGGTAATCCCCAGGGCACTGGTTCTGGAACCTACCAACCCCAGTATCATCTGGATTCCATTCCCTATGGGATCCCCAGTAAAGATTACAGGTATCTTCAAGGGCTGAAATCTGAGGGGGGTGAACATAGTTTCTTCTCCGAGGCTTCAGGAAGTAACAGGGTTCTCCGTATGGAGTCACCTATGGAAAACACATGGCCTTTGATGCCAACCAGAGTAGCCTCATTTTCTACATCGAAGTCAAGCAACAATTCCATGTTGCAGAGTGATTATCCCCAGCATTCATTTCTAACTGGCGAATATCCCTCCGGGGAACCTGCAAAGCCGGAGGGCAGCCAGTCTCTCCGACCTTTATTTGATGAATGGCCTAGAAGCAGGGAGGCATGGTCCGGTCTGCAGGATGAGAGATCTAAACAGACAGCTTTCTCAACAACACAACTCTCAATATCGATTCCGATGTCATCTTCTGAGTTCTCTGCAACAAGCTCTCAATCCCCGAATGGTGAGATTTAA	1050	0.5019	MRLQLAGVVAVPVEMNSGSASGGVGGGGGGAATGMMGMTRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSLESISQRFIHHPTMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESHTMTQSSTTVTSLTVTGGSSRTGNIQNLTANAFGNPQGTGSGTYQPQYHLDSIPYGIPSKDYRYLQGLKSEGGEHSFFSEASGSNRVLRMESPMENTWPLMPTRVASFSTSKSSNNSMLQSDYPQHSFLTGEYPSGEPAKPEGSQSLRPLFDEWPRSREAWSGLQDERSKQTAFSTTQLSISIPMSSSEFSATSSQSPNGEI	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2224	349	ProSiteProfiles	WRC domain profile.	103	147	IPR014977	-
	Bisa02g2224	349	ProSiteProfiles	QLQ domain profile.	42	77	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Bisa02g2224	349	MobiDBLite	consensus disorder prediction	313	327	-	-
	Bisa02g2224	349	SMART	QLQ_2	41	77	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Bisa02g2224	349	Pfam	QLQ	42	76	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Bisa02g2224	349	MobiDBLite	consensus disorder prediction	256	275	-	-
	Bisa02g2224	349	MobiDBLite	consensus disorder prediction	135	170	-	-
	Bisa02g2224	349	MobiDBLite	consensus disorder prediction	256	327	-	-
	Bisa02g2224	349	Pfam	WRC	104	146	IPR014977	-
	Bisa02g2224	349	MobiDBLite	consensus disorder prediction	146	170	-	-
	Bisa02g2224	349	PANTHER	GROWTH-REGULATING FACTOR 5	29	336	IPR031137	GO:0005634\|GO:0006351\|GO:0032502

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2224	Bisa-ChrBisa02	52392854	52398024	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2224	40	146	GRF Transcription Factor Family	AT3G13960	63.063	3.23e-47	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRF	Bisa02g2224		WRC	1.9e-21	No_clan