LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2210	ATGACTTGTTTTCCCTCATTCTTTGGTAGAAAGTCACATTCTCAAGCAAAGCTAGATCCAGACATTGAAGAAGAATTTTCAGGCATTAATGTTAGACTATATACCTACAAACAACTAAGAATTGCCACTGAGGATTTTAGTCCCGCCAACAAAATTGGGGAGGGCGGTTTTGGTTCTGTCTTCAAGGGACGGCTAAAAGATGGAAAAGTCGCTGCTATTAAAGTTCTTTCGGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATCTCAGAAATAGAGCATCAAAATTTGGTTAAGCTATATGGCTGTTGTGTGGAAGGAAATCACAGGATATTAGTTTACAATTACCTTGAGAATAACAGCCTTGCACAAACCCTTATAGGTGCACGTCATAGCAGTATTCAATTCAATTGGCGAACACGGTCAAGACTATGCATTGGGATTGCACGTGGGATTGCCTTTCTTCACGAGGAGGTGAGACCACATATAGTTCATAGGGATATAAAAGCAAGCAACATTCTTCTTGACAAAGACCTTACGCCCAAGATTTCAGATTTTGGGCTTGCAAAGCTTTTTCCTCCAAACACGACCCATGTCAGCACACGCGTCGCAGGAACCATAGGTTATTTGGCGCCAGAGTATGCAATAGGAGGAAAGCTGACACGGAAAGCCGACATTTACAGTTTTGGAGTCCTCCTTGTGGAGATTGTCAGTGGGAGGTCTAACATGAACACACAATTACCAGAAGAAGAACAGTACATTCTAGAAAGGACATGGGATCTTTATGAGCGAAGGGAATTGGTGGCGCTGGTAGACGCTTCACTAAATGGGGAGTTCGATGCTGAGGAGGCTTGCAACTTTCTGAAAATTGCCCTTCTTTGCATGCAGGAATCTCCGAAGCTCCGGCCATCCATGTCTTCTGTGGTCAAGATGCTCACAGGCGAAACTGATATTGATGACAGAAACATAACAAGACCAGCCATGATTACTGATTTTATGGACCTTAAAGTCGGCAGAAAACCGAAAAGTAATATTGGTATGGAAATTTCGTCCTCGTACAATGCATCGTCTTCCTGGTACAACACTACATTGTCATCGGATACTTCAACTGTTGCAAATTCAACCTTCACTGCAAAATATGATCAAAGCATGTAA	1170	0.4256	MTCFPSFFGRKSHSQAKLDPDIEEEFSGINVRLYTYKQLRIATEDFSPANKIGEGGFGSVFKGRLKDGKVAAIKVLSAESRQGVREFLTEIKVISEIEHQNLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGARHSSIQFNWRTRSRLCIGIARGIAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLFPPNTTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRSNMNTQLPEEEQYILERTWDLYERRELVALVDASLNGEFDAEEACNFLKIALLCMQESPKLRPSMSSVVKMLTGETDIDDRNITRPAMITDFMDLKVGRKPKSNIGMEISSSYNASSSWYNTTLSSDTSTVANSTFTAKYDQSM	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2210	389	CDD	STKc_IRAK	52	319	-	-
	Bisa02g2210	389	Gene3D	Transferase(Phosphotransferase) domain 1	122	332	-	-
	Bisa02g2210	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Bisa02g2210	389	SUPERFAMILY	Protein kinase-like (PK-like)	26	317	IPR011009	-
	Bisa02g2210	389	SMART	serkin_6	46	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2210	389	ProSiteProfiles	Protein kinase domain profile.	46	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2210	389	FunFam	cold-responsive protein kinase 1	122	333	-	-
	Bisa02g2210	389	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	351	-	-
	Bisa02g2210	389	FunFam	cold-responsive protein kinase 1	17	121	-	-
	Bisa02g2210	389	Gene3D	Phosphorylase Kinase; domain 1	17	121	-	-
	Bisa02g2210	389	ProSitePatterns	Protein kinases ATP-binding region signature.	52	74	IPR017441	GO:0005524
	Bisa02g2210	389	Pfam	Protein kinase domain	49	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2210	Bisa-ChrBisa02	51812883	51815643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2210	21	321	Receptor kinase-like Gene Family	AT1G07650	56.250	5.82e-114	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa02g2210		Pkinase	2.3e-48	CL0016