LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2179	ATGATGAGGTTCATTAACTCGAGGCCCATAAGGATTAAAGAAGTTGTCCCAACAAAATCACATGGATGGCAACGACAATTGGGGAATCGTGTTATAAAGGATTTTGACATAAAAAAGGAAGCTGGGGCCTCATTTAAAGCTGTCGAAAAGGAATTTCGGGTTCCTGTGTCAGAAAACTATGTCGAGATCCATTTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTTCCAGCTCAAGGTACTTATGGTCCTCTGATATCAACAATCAGTGCTGCCCCAGATTTTACACCCACTGTCAGTAACAAACCCCCAACCAGCAAAAAGAGCAAGACCGGTCTAATTGTGGGCATTGTTGTTGGTATTGGAGTTGTAGGCCTTCTGTCTGTTCTTGTGGTTTTCTATATAATTCAAAGAAGAAAGCATCATGAAGATGGTGACGAAGATCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAATTAAAGAATGCCACAAATGACTTCAATCCTGACAACAAGCTCGGAGAGGGAGGTTTTGGGCCTGTGTATAAGGGGACACTTAATGATGGGAGAGTAATTGCAGTAAAACAACTCTCTCTAGGATCCCATCAAGGAAGGAGCCAGTTCATAACTGAGATTGCTACTATATCTGCTGTGCAACACCGCAATCTAGTTAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAGAGTCTTGATCAAGCCTTATTTGGAAATTGCCTAGCCCTCAAATGGTCTACACGCTATGATATCTGCTTGGGCGTAGCAAGAGGTTTGGCTTATCTTCATGAAGAGTCACGGCTCCGTATTGTACACCGTGATGTAAAAGTTAGTAATATTCTGCTTGATCATCAGCTTGTTCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGACAAAAAAACTCATATAAGCACCCGAGTGGCTGGGACAATTGGATATCTCGCTCCGGAGTATGCCATGCGTGGACATCTTACTGAGAAAGCAGATGTGTTTTCCTTTGGTGTTGTGGCCCTTGAGATAGTTAGTGGGAGACCAAATTCTGGTTCAAACTTGGAAGGGGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTGCATGAAAACAGATGTGTACTTGAACTTGTAGATCCAAGACTATCATCAGATTTCAATGAGGAGGAAGTTAAAAGAATTGTAGGGATATCACTTTTGTGCACTCAAACATCACCATTGTCAAGGCCATCGATGTCCCGTGTGGTGGCAATGCTCTCCGGAGATATCGAAGTGAGCACTGTAACTTCAAGGCCCGGATATTTGACTGACTGGAAATTTGATGATGTGAGTCATGTGACAAGCATCATGACTGACTTGGCTACAAAAGGATCTGATACAAGTCAGTATAACTCCTCAGCAAGTACTAGCATAGTTGGTTATTCAAACCAATGTCCTGTAGATACTTCTAAACCTATCCTTCATGACTCTCTTAGTGAAGGTAGGTAA	1545	0.4142	MMRFINSRPIRIKEVVPTKSHGWQRQLGNRVIKDFDIKKEAGASFKAVEKEFRVPVSENYVEIHFFWAGKGTCCVPAQGTYGPLISTISAAPDFTPTVSNKPPTSKKSKTGLIVGIVVGIGVVGLLSVLVVFYIIQRRKHHEDGDEDLLGIDTKPYTFSYSELKNATNDFNPDNKLGEGGFGPVYKGTLNDGRVIAVKQLSLGSHQGRSQFITEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFGNCLALKWSTRYDICLGVARGLAYLHEESRLRIVHRDVKVSNILLDHQLVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIVSGRPNSGSNLEGEKMYLLEWAWQLHENRCVLELVDPRLSSDFNEEEVKRIVGISLLCTQTSPLSRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSHVTSIMTDLATKGSDTSQYNSSASTSIVGYSNQCPVDTSKPILHDSLSEGR	514

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2179	514	SUPERFAMILY	Protein kinase-like (PK-like)	153	457	IPR011009	-
	Bisa02g2179	514	Gene3D	Transferase(Phosphotransferase) domain 1	246	449	-	-
	Bisa02g2179	514	Pfam	Protein tyrosine and serine/threonine kinase	173	438	IPR001245	GO:0004672\|GO:0006468
	Bisa02g2179	514	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	28	471	-	-
	Bisa02g2179	514	SMART	serkin_6	170	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2179	514	CDD	STKc_IRAK	176	438	-	-
	Bisa02g2179	514	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	289	301	IPR008271	GO:0004672\|GO:0006468
	Bisa02g2179	514	Gene3D	Phosphorylase Kinase; domain 1	132	245	-	-
	Bisa02g2179	514	FunFam	Leucine-rich repeat receptor-like protein kinase	139	245	-	-
	Bisa02g2179	514	Gene3D	-	26	91	-	-
	Bisa02g2179	514	ProSiteProfiles	Protein kinase domain profile.	170	444	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g2179	514	Pfam	Malectin domain	28	88	IPR021720	-
	Bisa02g2179	514	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	246	450	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2179	Bisa-ChrBisa02	50870060	50878501	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2179	28	514	Receptor kinase-like Gene Family	AT1G56120	63.951	0.0	638

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa02g2179		PK_Tyr_Ser-Thr	1e-47	CL0016