Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2176 ATGTGTTGTATAGATTTTACACCGACTGTCAGTAAAAAACGCCCAACTGGTCTGATTGTGGGAATTGTTGTTAGTATTGGAGTTGTAGGGCTTCTGTCTGTTCTTGTGGTTTTCTATATAATTCAAAGAAGAAAGCATCATGGAGATGGTGACCAAGAGCTTTTAGGTATTGATACGAAGCTATACACTTTCAGCTTTTCTGAATTAAAGAATGCCACAGATGACTTCAATCCTGACAACAAGCTTGGAGAGGGAGGTTTTGGGCCTGTGTATAAGGGGACACTTAATGATGGAAGAGTAATTGCAGTAAAACGACTCTCTCTAGGATCCCATCAAGGAAAGAGCCAATTCATAACTGAGATTGCTACTATATCTGCTGTGCAACACCGCAATCTTGTTAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAGAGTCTTGATCAAGCATTATTTGGAAATTACCTAGATCTCAAATGGTCTACACGCTATGATATCTGTTTGGGCATAGCGAGAGGTTTGGCTTATCTTCATGAAGAGTCACGGCTTCGTATTGTACACCGTGATGTGAAATCTAGTAATATTCTGCTTGATCATGAGCTTGTTCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGACAAAGAAACCCATATAAGCACTCGAGTGGCTGGGACATTTGGATATCTCGCTCCGGAGTATGCCATGCGTGGACATCTTACTGAGAAAGCAGATGTGTTTTCCTTTGGTGTTGTGGCTCTTGAGATAGTTAGTGGGAAGCCAAATTCTTCTTCAAACTTAGAAGGGGAGATGATGTATCTTCTAGAATGGGCTTGGCAGCTGCACGAAAACAAATGTGTACTTGAACTTGTAGATCCAAGACTATCATCAAATTTCAATGAGGAGGAAGTTAAAAGAATTGTAGGGATATCACTTTTGTGCACTCAAACATCACCATTGGCAAGGCCATCAATGTCCCGTGTGGTGGCAATGCTTTCTGGAGATATTGAAGTGAGCACTGTAACTTCGAGGCCCGGATACTTGGCTGACTGGAAATTTGATGATGTGACAAACATCATGACTGGCTTTGCTACAAAACGATCTGATATAAGTCACTATAACTCCTCAGCAAGTACAAACATAACTGGTTATTCAAACCAATTTCCTGTAGATGCATCTAAACCTATCCTTCATGACATACTTAATGAAGATTGA 1251 0.3957 MCCIDFTPTVSKKRPTGLIVGIVVSIGVVGLLSVLVVFYIIQRRKHHGDGDQELLGIDTKLYTFSFSELKNATDDFNPDNKLGEGGFGPVYKGTLNDGRVIAVKRLSLGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFGNYLDLKWSTRYDICLGIARGLAYLHEESRLRIVHRDVKSSNILLDHELVPKISDFGLAKLYDDKETHISTRVAGTFGYLAPEYAMRGHLTEKADVFSFGVVALEIVSGKPNSSSNLEGEMMYLLEWAWQLHENKCVLELVDPRLSSNFNEEEVKRIVGISLLCTQTSPLARPSMSRVVAMLSGDIEVSTVTSRPGYLADWKFDDVTNIMTGFATKRSDISHYNSSASTNITGYSNQFPVDASKPILHDILNED 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2176 416 SMART serkin_6 76 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g2176 416 SUPERFAMILY Protein kinase-like (PK-like) 59 362 IPR011009 -
Bisa02g2176 416 Pfam Protein tyrosine and serine/threonine kinase 79 344 IPR001245 GO:0004672|GO:0006468
Bisa02g2176 416 ProSiteProfiles Protein kinase domain profile. 76 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g2176 416 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 377 - -
Bisa02g2176 416 Gene3D Phosphorylase Kinase; domain 1 39 151 - -
Bisa02g2176 416 FunFam Putative LRR receptor-like serine/threonine-protein kinase 152 356 - -
Bisa02g2176 416 Gene3D Transferase(Phosphotransferase) domain 1 152 355 - -
Bisa02g2176 416 CDD STKc_IRAK 82 344 - -
Bisa02g2176 416 FunFam Leucine-rich repeat receptor-like protein kinase 45 151 - -
Bisa02g2176 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2176 Bisa-ChrBisa02 50694174 50701907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2176 5 409 Receptor kinase-like Gene Family AT1G56120 62.319 4.40e-175 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Bisa02g2176 PK_Tyr_Ser-Thr 6.2e-48 CL0016