Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2121 ATGTCAAATCAGCTCTATCTCTACGGCTATAGCCCTACATACGGAGGAGCTTCCCCGCCTTCTCCTGCCGCCGCCGCCGCCTCAGCCACTGGCACTACCCTTCCCTCCGGCCGCCACCTCCCAGCCGATATGTATTTTCCCCAGCGCAAAGACGCCTCTGTCCGGTACTCCTCTTATGCTGCCGCTTCCGATATCGACATTGCCCCCCCTGGTGTAGCCACCAGAGTCTCCGGTGCCGCCGCTGGACCATCATCTTCCACCACTACTCATTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCCGCCGCTGCCGCTGCTGCGAATGTTGGGTCGGCTGCACTCGACCCGAGTGTTAGCAACATAAAACGCTCTTCTGATGCGCTCTACATTCCAACTGTTTTGCATGCCCATAATACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAATGAAGCGCCCTAGATACGAGAGTGCAAGCAATTTGCCTATATACCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGCGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGATGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAGAGCCAGATTGTCCGTACTTCGTTAAGACTCAGAGATGCAAGTTTGGTTCTAGGTGCAAGTTTAATCATCCCAAGGAATTTTTTGAAAATGCTGATGCTTCTGCCTTACCTGAGAGGCCTTCTGAGCCCCCTTGTGCGTTCTACATGAAGACGGGAAGATGTAAATTTGGTGTTACTTGCAAATTTCATCACCCAAAAGAAATCCAGATTCAGCTGTCCGAAGAACTGAATGGTAATATTGAGCAGACCCAATTAATTGCTAAGACTGAGGGGGCAACAGGAGAAAGACAATTATCTAATCCTCTTATTTCATACACTTCTCCACTATTACACAATAGCAAAGGGCTTCCTATAAGACTGGGTGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCTACATGTCGCTACAATCATCCTGACCGCAATGTAATTAATCCGCCAGTTGCTGGGTTTGGCCATTCTATTTTGACGTCATCAGCAGCTAATCTTAACATTGGAATTGCTAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAATGCATCGGTGGGAATAGGACAAACTGTCTATCCTCAACGACCTGGACAGATTGAATGTGATTATTATATGAAGACTGGAGAATGTAAGTTTAGTGAAAGATGCAAGTTCCATCACCCAATTGACCGCTCAGCACCGTCACTGTCAAGTTCGGCTGCACAACAAACTGTTAAACTCACTCCCGCAGGACTACCAAGGAGAGAGGGTGTTGTGATCTGTCCATATTATTTGAAAACCGGCACTTGCAAGTTCGGTGCAACCTGCAAGTTTGACCACCCACCTCCGGGAGAAGTTATGGAGATGGCAAAGTTACACGGAGTATCTGCAGCCAATGGAGTAGAGGAAGCAAAAGTTGATGAAACAGAGGCTGATTCTGTTCAGGAAAAGCAATGA 1635 0.4709 MSNQLYLYGYSPTYGGASPPSPAAAAASATGTTLPSGRHLPADMYFPQRKDASVRYSSYAAASDIDIAPPGVATRVSGAAAGPSSSTTTHLLSQASWPAAIAAAAAAANVGSAALDPSVSNIKRSSDALYIPTVLHAHNTIGQSEAWYSTNSLMKRPRYESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNDVTSETLPERPGEPDCPYFVKTQRCKFGSRCKFNHPKEFFENADASALPERPSEPPCAFYMKTGRCKFGVTCKFHHPKEIQIQLSEELNGNIEQTQLIAKTEGATGERQLSNPLISYTSPLLHNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPVAGFGHSILTSSAANLNIGIANPAASIYQAIDPRLSNASVGIGQTVYPQRPGQIECDYYMKTGECKFSERCKFHHPIDRSAPSLSSSAAQQTVKLTPAGLPRREGVVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKLHGVSAANGVEEAKVDETEADSVQEKQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 484 508 IPR036855 GO:0046872
Bisa02g2121 544 FunFam zinc finger CCCH domain-containing protein 37 426 522 - -
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 228 251 IPR036855 GO:0046872
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 370 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 431 454 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 483 508 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 250 IPR000571 GO:0046872
Bisa02g2121 544 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 197 IPR000571 GO:0046872
Bisa02g2121 544 Gene3D - 425 522 - -
Bisa02g2121 544 Gene3D - 222 303 - -
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Bisa02g2121 544 PANTHER PROTEIN PHOSPHATASE RELATED 332 382 - -
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 172 198 IPR036855 GO:0046872
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Bisa02g2121 544 FunFam Zinc finger CCCH domain-containing protein 37 330 377 - -
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 481 509 IPR000571 GO:0046872
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 268 291 IPR036855 GO:0046872
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 348 372 IPR036855 GO:0046872
Bisa02g2121 544 Gene3D - 331 376 - -
Bisa02g2121 544 Gene3D - 134 210 - -
Bisa02g2121 544 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Bisa02g2121 544 SUPERFAMILY CCCH zinc finger 430 456 IPR036855 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 481 508 IPR000571 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 428 455 IPR000571 GO:0046872
Bisa02g2121 544 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Bisa02g2121 544 FunFam Zinc finger CCCH domain-containing protein 37 127 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2121 Bisa-ChrBisa02 48211492 48235183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2121 342 520 C2H2 Transcription Factor Family AT3G02830 36.667 3.18e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g2121 zf-CCCH 7.2e-11 CL0537