Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2115 ATGCCAGCATTCATCTCATCACGCTTGGTCCTGCTAATTGGAGACTCACTGCCCTTGGGAAGGTTCTTGCCCACTTCTAGGGCAGCTTGGTTGCATAGCAGTGTCCAGTCGTTGAGTCAGATAGAACCTCAACATGCTCCCCTTACTCCTTTGAGCGTTGCTTTCAATAGTGAAATTGAAACCAGGAAGAAAGACAAAGTAAATAAATTGAAGCATTTAAGTTCCTCCTCAATAGCCTCCAAGAACAAAGCAAAGGTCACTGGTATCAATGAACTTAAAGCAAATGGATCCATAAAGAAGCAGCTAATGGAGTCTGTTCCATTTGCTGTTACGTCTTTTTCTGAATTTGGCCTCTCTCCATCGTTGATTGAGAGATTAGAACATGAAGGTTTTACAGTTCCAACTGAAGTGCAATCTACAGCAATTCCTACAATTTTAAAGAATCATGATGTCATAATTCAATCTTACACAGGTTCAGGAAAAACATTGGCTTATCTCCTCCCAATACTTTCTAATGTTGGCCCACTGAGGAACAAAACTTTTGAAGTTAACAGTGATAGTGAACCTGGGAGGAAAATGGGAATAGAAGCAGTAATTGTTGCCCCCTCTAGGGAGCTGGGCATGCAAATAGTGAGGGAGTTTGAAAAGATACTTGGACTTGCTAACAAGAAAGCGGTTCAACAACTTGTGGGAGGTGCTAACCGGTCCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCAGCTATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTCAGTGCTGCCGGGAAACTTCACACCCATGGCTGTCGTTATTTGGTCCTAGATGAAGTTGATGAACTGCTGTCATTTAACTTCAGAGAGGACATGCACCGGATACTGGAACATGTGGGAAAGATTTCAGGTGCAGGCCCACATGGGAAAAATGGTGCAATTCCCAAACGGGCTGAGCGTCAAACAATTATGGTGTCTGCAACTGTTCCCTTTTCTGTTGTAAGGGCTGCCCGGAGCTGGGGGCATGATCCACTTCTTGTGCAAGCCAATAGAGTTGCCTTGCTTGAAACCATATCTCCTTCCAAACAAGTCAGTTTGTCATGTTCTACACCTAGCTCAAACCCTAACTCGACTATGGTAATGCAGGCAACTGTAGAGAGTCTACCTCCTGCATTGAAACATTATTATTGTGTCACAAAATTACAGCACAAAGTTGATACCTTGAGGAGGTGTATTCATGCATTAGATGCGAAATTTGTGATAACTTTCATGAATAATATTAAGCAACTTAAAGATGTTGTCTTCAAGCTAGAGGCCCGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAGAAAATTCAAGAATGGTGAGGTGAGAGTGCTGGTGACCAATGAATTATCAGCAAGGGGCTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCAACAGATTCGATTCACTATGCACACCGAGCTGGCAGGACAGGTCGGCTTGGTAGGACTGGTACAGTGCTTTCAATATGTGAACAGCCAGAAGTGTTTGTTGTGAAGAAACTGCAGAAACAGCTCGGGATACCAATAGTATGCTGTGAGTTTTCAGAGGGGAAGCTGCTTGTTAACCAAGAAGAGAAAGTGCTGAGATGA 1680 0.4369 MPAFISSRLVLLIGDSLPLGRFLPTSRAAWLHSSVQSLSQIEPQHAPLTPLSVAFNSEIETRKKDKVNKLKHLSSSSIASKNKAKVTGINELKANGSIKKQLMESVPFAVTSFSEFGLSPSLIERLEHEGFTVPTEVQSTAIPTILKNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTFEVNSDSEPGRKMGIEAVIVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDMHRILEHVGKISGAGPHGKNGAIPKRAERQTIMVSATVPFSVVRAARSWGHDPLLVQANRVALLETISPSKQVSLSCSTPSSNPNSTMVMQATVESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKFVITFMNNIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLRKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRTGTVLSICEQPEVFVVKKLQKQLGIPIVCCEFSEGKLLVNQEEKVLR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2115 559 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Bisa02g2115 559 CDD SF2_C_DEAD 391 520 - -
Bisa02g2115 559 Gene3D - 388 545 IPR027417 -
Bisa02g2115 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Bisa02g2115 559 SMART helicmild6 430 511 IPR001650 -
Bisa02g2115 559 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Bisa02g2115 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Bisa02g2115 559 Pfam Helicase conserved C-terminal domain 406 511 IPR001650 -
Bisa02g2115 559 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 549 - -
Bisa02g2115 559 CDD DEADc 122 347 - -
Bisa02g2115 559 Gene3D - 68 349 IPR027417 -
Bisa02g2115 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Bisa02g2115 559 SMART ultradead3 130 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2115 Bisa-ChrBisa02 48046358 48048037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2115 111 539 Eukaryotic Initiation Factors Gene Family AT5G11200 26.757 1.31e-43 160