LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g2082	ATGGATATGCCTTTCACTTCCAGCAGTAGTAGAAATAGTAACATCACAGAAGGAGAAGGTGCTGCGTCTTCTGCATACAGGGGTGTGCGTAAGAGGAAATGGGGGAAGTGGGTGTCCGAAATCCGGGAGCCTGGCAAGAAGACCAGAATTTGGTTAGGAAGCTTCAAGACGCCGGAGATGGCTGCAGCTGCCTACGACGTTGCCGCCTTACACTTCCGGGGACGAGAGGCCAGGCTCAACTTCCCCGAGCTGGCCGGCGCCCTTCCCCGTCCGGCAAGCAACGATGCCGACGACATTCGTATGGCGGCACACGAGGCGGCCCTGAGGCTGAGGACCTCTCCGCGAGTGGCCATGGAGGGTAGCGGGCCTTCCGATTCCGGGGTGGCGCCGGTTACTGTTAGGCTGTCGCCGACACAGATTCAGGCCATCAATGAGTCGCCGTTGGACTCACCCAAGATGTGGATGCAAATGGCAGGGGCGGTGATGTTGGAGGATGAATCCACGATGTTTGTGAATGAGTGGGAGTCAGAGGATATGCAAAGTGATTCCCTTTGGGATTCATAG	564	0.5709	MDMPFTSSSSRNSNITEGEGAASSAYRGVRKRKWGKWVSEIREPGKKTRIWLGSFKTPEMAAAAYDVAALHFRGREARLNFPELAGALPRPASNDADDIRMAAHEAALRLRTSPRVAMEGSGPSDSGVAPVTVRLSPTQIQAINESPLDSPKMWMQMAGAVMLEDESTMFVNEWESEDMQSDSLWDS	187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g2082	187	PRINTS	Ethylene responsive element binding protein signature	26	37	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	PRINTS	Ethylene responsive element binding protein signature	64	84	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	ProSiteProfiles	AP2/ERF domain profile.	25	82	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	MobiDBLite	consensus disorder prediction	1	20	-	-
	Bisa02g2082	187	SUPERFAMILY	DNA-binding domain	24	83	IPR016177	GO:0003677
	Bisa02g2082	187	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	10	157	-	-
	Bisa02g2082	187	Pfam	AP2 domain	25	74	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	CDD	AP2	24	84	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	FunFam	Ethylene-responsive transcription factor 2	24	83	-	-
	Bisa02g2082	187	Gene3D	AP2/ERF domain	25	83	IPR036955	GO:0003700\|GO:0006355
	Bisa02g2082	187	SMART	rav1_2	25	88	IPR001471	GO:0003700\|GO:0006355
	Bisa02g2082	187	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g2082	Bisa-ChrBisa02	46555502	46556065	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g2082	9	186	AP2-EREBP Transcription Factor Family	AT1G71450	61.111	8.71e-66	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa02g2082		AP2	6.9e-13	CL0081