Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2052 ATGCTTTCTCTTTCTCTTGCCCCTCTCCTTTGTTCCATATTTTGCTTCACTCCTCTAGCACCAAGGTCCCAACTTCAACTTTCACCACCATCTTTGGTGAACCTCTTTCCTCCAGCAACCATCCTTTTTCCACCAGTATTCTCAATATTCGAGAGACCGAACACGAGCTGCCAAAAGCGCCGATCACCGACATTTGTTTGGTCATTCCAAGAATTGTTAGGCGCTGGTTGCTTTGAAGCAAGGATTTTAGTTTATGCTATTCCTAAATACGGCAAAATGATGAGGCTACAGACATATGCGGGGCTTAGTTTGATTGCAACTCTAGCTGTTACATATCATGCATTTAACAGCAGAGGCCAGTTTTATCCTGCAATGGTTTTTCTGTCAACTTCCAAGATCAGTTTGGTACTTCTTCTCAATATGGGTCTGGTCATTATGTGTCTTTTATGGCAATTAACGAAAAAGGTATTCCTTGGCTCACTCCGTGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCAATTACCATTTTTAGGCAGGATTTCTCTGTTACTTTCCTTGCTATGGTCACAGCACTGTTGTTGATAAAAGCTTTGCATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACTACTCCTTCAGTGCCCTTGTTGTCTCACATTCGAATTGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATGGGCTCTTTTTATATAGTTCCATGAAGCATTTGATATTATCGTGGCAGGCTTCAGTTTCCCTCTTCTTTTGTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTGAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACGTTTTACCTGGAACTCATCAGGGATTTGCTTCACCTGTCTATGTATATGTGCTTCTTCCTTGTAATTTTCATAAACTATGGTGTTCCTTTGCACTTAATACGGGAGCTTTATGAGACATTTAGGAACTTTAAAGTCCGTGTTGCCGATTACGTACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACTCCTGAAGAGCTTAATGCAAGTGATGCAACCTGTATTATCTGTCGTGAAGAGATGACTACAGCGAAGAAACTTATATGTGGACATCTTTTTCATGTGCATTGCCTTCGGTCATGGTTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAAATGCTGCTGGAGGCCAGCATGGATCACAGTCAGATGCTCATCGACAGGGAACAGGGATGGGTACTGGAAGCACAGCTCATGCTGAAGCTGGCGGGGGGGTGGGAACTGATAATTTGAGTCAGCATCAAGCAAGACTCCGAGCTGCAGCTGCAGCTGCTTCAATATATGAGAAGTCTTATGTATACCCCTCTGCAACATCTTTTGTATGTTCCTTTGGATATACTGTTTATCCTCCTGCTCAAAGGCCTGTGGCTGAATCTTCTAATACTGAGCTTAATGGAGAACAGGCTTCAAGTGCACGAACACAAAGGCAGTTAGTCATCCCTGGTGGACCAATGAATGTTTCCTTTCCTCCAATGGGACAGTTTCTTTTTCCTCCTTCTGTGACACATGCATCCAACGAGAATTCTAGAGAGGGATCTGGATTCGATCCAAATATGCCAAGCTCTCAGCTGGAAGCTGAAAAAAAACTTCTTCAATACCAGATTGAGATTCTGCAAAATCAGCTCCAGCTTCTGCCGAAGACGGTTGGGGAAAGTGAAAATGAGAGCAAATCATCATTAGGTAGCAAAGGCAAGCACATTGCTTCCTCTTCATCTGTGTCTGACCATGGGCGACATGAGGAGTTTCAAGATGGCAGTGCATGA 1944 0.4321 MLSLSLAPLLCSIFCFTPLAPRSQLQLSPPSLVNLFPPATILFPPVFSIFERPNTSCQKRRSPTFVWSFQELLGAGCFEARILVYAIPKYGKMMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPLLSHIRIVSFMGFLLLLDGLFLYSSMKHLILSWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTNAAGGQHGSQSDAHRQGTGMGTGSTAHAEAGGGVGTDNLSQHQARLRAAAAAASIYEKSYVYPSATSFVCSFGYTVYPPAQRPVAESSNTELNGEQASSARTQRQLVIPGGPMNVSFPPMGQFLFPPSVTHASNENSREGSGFDPNMPSSQLEAEKKLLQYQIEILQNQLQLLPKTVGESENESKSSLGSKGKHIASSSSVSDHGRHEEFQDGSA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2052 647 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 356 431 - -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 560 581 - -
Bisa02g2052 647 Pfam Ring finger domain 383 422 IPR001841 -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 608 647 - -
Bisa02g2052 647 ProSiteProfiles Zinc finger RING-type profile. 384 422 IPR001841 -
Bisa02g2052 647 SMART ring_2 384 421 IPR001841 -
Bisa02g2052 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 429 IPR013083 -
Bisa02g2052 647 Coils Coil 581 601 - -
Bisa02g2052 647 SUPERFAMILY RING/U-box 364 428 - -
Bisa02g2052 647 CDD RING-H2_synoviolin 381 422 - -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 632 647 - -
Bisa02g2052 647 PANTHER RING ZINC FINGER PROTEIN 91 615 - -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 432 470 - -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 434 455 - -
Bisa02g2052 647 MobiDBLite consensus disorder prediction 608 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2052 Bisa-ChrBisa02 45683739 45695557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2052 93 618 C3H Transcription Factor Family AT3G16090 65.356 0.0 666