Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2008 ATGGACCTTGGAGGAGTTCGTAAAAGGGGAAGGCCTGAATCTGCGTTCAATGGCGGCGTCAAGAAATCCAGGCCAGAAATGGAGTCCTTTCCAAGTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGCTGTCCATTTGGTGAGGGATGTCATTTCTTGCACTATGTTCCTGGTGGCATAAAAGCTGTCTCTCAGATGATTAGTGTTGGTACCAATCCTACACTTCCACAAGCTGGTAGAAATCCAACTATTCCACCATCCTTCCCAGATGGCTCGTCTCCCCCGGCTGTTAAAACCCGCCTGTGCAACAAGTATAATACAGCTGAAGGTTGTAAATTTGGCGATAAATGCCACTTCGCCCATGGTGAGTGGGAGCTTGGCAAACCCACTGTCCTATCATATGAAGATCCTCGTTCCTTGGGACAAATGCAAAGCAGGGTTGGTGGGCGGGTTGAGCCGCCACCTCCAGCTCATGGAGCTGCAGCAAGCTTTGGAGCATCTGCTACTGCTAAGATTAGTATCAATGCTTCACTCGCTGGAGCCATTATTGGAAAAAATGGTGTCAACTCTAAGCAAATCTGTCGTGTGACAGGAGCGAAACTTTCTATCAAGGAACATGACTCAGATCCTAATCTCAAGAACATTGAGCTTGATGGCAGTTTTGATCAGATTAAACAAGCTAGTGCTATGGTTCGTGAACTTATTGTAAATGTTGGTTCTGTCTCTGGACCTCCTATGAAAAACATTGCAGCACATGCTTCTGGCCCGGCTAGTAACTTCAAGACTAAACTATGTGAAAACTTTGCCAAAGGATCTTGCACTTTCGGTGAAAGGTGCCACTTTGCACATGGAGCAGACGAATTACGCAAGCCTGGAATGTGA 900 0.4644 MDLGGVRKRGRPESAFNGGVKKSRPEMESFPSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMISVGTNPTLPQAGRNPTIPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPTVLSYEDPRSLGQMQSRVGGRVEPPPPAHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIKEHDSDPNLKNIELDGSFDQIKQASAMVRELIVNVGSVSGPPMKNIAAHASGPASNFKTKLCENFAKGSCTFGERCHFAHGADELRKPGM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2008 299 FunFam Zinc finger CCCH domain-containing protein 260 296 - -
Bisa02g2008 299 Pfam RNA-binding, Nab2-type zinc finger 40 60 - -
Bisa02g2008 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 290 IPR000571 GO:0046872
Bisa02g2008 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 129 IPR000571 GO:0046872
Bisa02g2008 299 Gene3D - 263 296 - -
Bisa02g2008 299 Gene3D - 97 134 - -
Bisa02g2008 299 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Bisa02g2008 299 SUPERFAMILY CCCH zinc finger 264 295 IPR036855 GO:0046872
Bisa02g2008 299 ProSiteProfiles Zinc finger C3H1-type profile. 102 130 IPR000571 GO:0046872
Bisa02g2008 299 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Bisa02g2008 299 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 155 IPR045877 GO:0003729
Bisa02g2008 299 Pfam KH domain 176 239 IPR004088 GO:0003723
Bisa02g2008 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 244 IPR036612 GO:0003723
Bisa02g2008 299 SUPERFAMILY CCCH zinc finger 101 133 IPR036855 GO:0046872
Bisa02g2008 299 ProSiteProfiles Type-1 KH domain profile. 173 237 - -
Bisa02g2008 299 FunFam Zinc finger CCCH domain-containing protein 97 134 - -
Bisa02g2008 299 CDD KH-I_AtC3H36_like 177 241 - -
Bisa02g2008 299 Gene3D K Homology domain, type 1 169 262 IPR036612 GO:0003723
Bisa02g2008 299 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Bisa02g2008 299 SMART c3hfinal6 102 129 IPR000571 GO:0046872
Bisa02g2008 299 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Bisa02g2008 299 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Bisa02g2008 299 MobiDBLite consensus disorder prediction 1 35 - -
Bisa02g2008 299 SMART kh_6 172 242 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2008 Bisa-ChrBisa02 43876329 43893936 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g2008 KH_1 1.5e-10 CL0007