LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1948	ATGGCCTCTCCAAGTGGTGCTTCTTCTGGTTCCAGCTCTTATCAGGAAGAGGTGGAGAAGCAAGACATTATGGAGGAGAAGAAAAGGAAGAGATTGCTGTCCAATCGCGAATCGGCACGTCGATCGAGAATGAAGAAACAGCAACACGTGGAAGGTCTGATTGGGGAAGTGGGTGAGCTGAGGAAACAGAACAGCCAAATGATCACAAGCTTGGGCATCACCACCCAACTGTACCTAAACGTTGAGGCAGAGAATGCAAATCTCAGGACTCAGGTGGCATTGTTAAGTAACAGATTGCATTCTCTCAATGAGATCATAGACTACATAGACTCAAGCAGTTACCTCTTTCAGGAGGTTGAAGAGATAACACAGTTGGACCCATGGAATCAACCTATGATGGCCTCTACTAATAACATGTTGATGTATTCATGTGAATGA	438	0.4521	MASPSGASSGSSSYQEEVEKQDIMEEKKRKRLLSNRESARRSRMKKQQHVEGLIGEVGELRKQNSQMITSLGITTQLYLNVEAENANLRTQVALLSNRLHSLNEIIDYIDSSSYLFQEVEEITQLDPWNQPMMASTNNMLMYSCE	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1948	145	CDD	bZIP_plant_GBF1	28	78	IPR045314	GO:0003700\|GO:0006355
	Bisa02g1948	145	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	25	67	IPR004827	GO:0003700\|GO:0006355
	Bisa02g1948	145	MobiDBLite	consensus disorder prediction	1	17	-	-
	Bisa02g1948	145	MobiDBLite	consensus disorder prediction	1	49	-	-
	Bisa02g1948	145	FunFam	BZIP transcription factor	25	76	-	-
	Bisa02g1948	145	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	30	45	IPR004827	GO:0003700\|GO:0006355
	Bisa02g1948	145	SMART	brlzneu	23	87	IPR004827	GO:0003700\|GO:0006355
	Bisa02g1948	145	Gene3D	-	25	80	-	-
	Bisa02g1948	145	MobiDBLite	consensus disorder prediction	18	49	-	-
	Bisa02g1948	145	Coils	Coil	78	105	-	-
	Bisa02g1948	145	Pfam	bZIP transcription factor	26	72	IPR004827	GO:0003700\|GO:0006355
	Bisa02g1948	145	SUPERFAMILY	Leucine zipper domain	27	79	IPR046347	GO:0003700\|GO:0006355
	Bisa02g1948	145	PANTHER	BZIP TRANSCRIPTION FACTOR 44	6	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1948	Bisa-ChrBisa02	41885802	41886989	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1948	23	142	bZIP Transcription Factor Family	AT4G34590	46.377	1.01e-32	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Bisa02g1948		bZIP_1	5.8e-11	CL0018