LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1927	ATGTATTGGGGAGTGATGGGAAGCCACATGGGTTGGGGCATAATAGAGGAAGAGGGCTGGAGGAAGGGCCCTTGGACGGCTGAAGAAGACAGACTTCTCATTGAGTATGTGAGGATCCATGGTGAAGGAAGATGGAACTCTGTTGCTAGACTTGCAGGGTTGAAGAGAAATGGAAAAAGTTGCAGATTGAGGTGGGTGAATTATTTGAGACCTGACCTCAAGAGGGGTCAGATGACACCACAAGAAGAGAGCGTAATTCTGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCGAGAAGCTTGCCTGGTAGGACGGACAATGAGATAAAGAACTACTGGAGGACTCATTTCAAGAAGAAGATGAAAAGTCCCACCGATGCTGCCGACAAAGCGAAAAATCGTCTCTTGAGGAGGCAACAGTTTCAGCAGCAGCAACAACAACAATTGCAGCAGCAATTGCTACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAATTGGAGTTAAACTTCGACATGAAAGGGATCATGGCCTTGCTTGAGGACAATTGTGACTACAAGGTGCCTTCAAATCTATGCTCAATGGCCAACATGTACCCAAACGCTTCAGAAGAGCAAAGCTTCTTCTACTCTATGCTCAACAACAATGCCAATAATGCCTCTGCACAAGAGGCCTCAAATGAAGAGCCCTTGTGGGATGGCCTGTGGCAGTGGAACTTGGATGATGTTCATGGAAATTTCGGTGCAGCTAGTACAACAACCAAATCCACCCTGCATAGTTTAGTCACTCCCTTCTGTTGA	822	0.472	MYWGVMGSHMGWGIIEEEGWRKGPWTAEEDRLLIEYVRIHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQMTPQEESVILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKMKSPTDAADKAKNRLLRRQQFQQQQQQQLQQQLLQQQQQQQQQQQQQQQQLELNFDMKGIMALLEDNCDYKVPSNLCSMANMYPNASEEQSFFYSMLNNNANNASAQEASNEEPLWDGLWQWNLDDVHGNFGAASTTTKSTLHSLVTPFC	273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1927	273	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Bisa02g1927	273	Gene3D	-	22	74	-	-
	Bisa02g1927	273	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	17	221	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1927	273	CDD	SANT	24	69	IPR001005	-
	Bisa02g1927	273	Gene3D	-	78	124	-	-
	Bisa02g1927	273	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	73	IPR017930	-
	Bisa02g1927	273	FunFam	Myb transcription factor	22	74	-	-
	Bisa02g1927	273	CDD	SANT	78	120	IPR001005	-
	Bisa02g1927	273	Coils	Coil	135	177	-	-
	Bisa02g1927	273	SMART	sant	74	122	IPR001005	-
	Bisa02g1927	273	SMART	sant	21	71	IPR001005	-
	Bisa02g1927	273	SUPERFAMILY	Homeodomain-like	19	116	IPR009057	-
	Bisa02g1927	273	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Bisa02g1927	273	FunFam	MYB transcription factor	79	158	-	-
	Bisa02g1927	273	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Bisa02g1927	273	Pfam	Myb-like DNA-binding domain	75	119	IPR001005	-
	Bisa02g1927	273	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1927	Bisa-ChrBisa02	41062680	41063719	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1927	17	273	MYB Transcription Factor Family	AT4G13480	53.184	2.34e-86	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa02g1927		Myb_DNA-binding	1.4e-16	CL0123