Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1885 ATGGATTCGGATCAAGGCAAGCTTTTCATTGGTGGGATATCATGGGAGACAACGGAGGATAAACTCAAGGAGCATTTTAGCAACTATGGCGATGTCATTCACGCTTCAGTTATGCGGGAGAAGAATACTGGGAAGCCCAGAGGCTTTGGGTTCGTGGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGACAAGCACGTAATTGATGGAAGAACGGTAGATGCCAAGAAGGCATTTTCAAGAGAGGATCAACAAATTTCTGCCACTTCCAGAGCTGGAAATCCCAATTCTGCTAGGAGTGCAGGAAATGGTGGAAGTATCAAGACCAAAAAAATCTTTGTTGGAGGGTTGCCTCCTACCTTGACTGAAGAAAAGTTTCGCCTATATTTTGAGGCTTATGGCCTTGTAACTGATGTAGTAGTCATGTACGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATATCCTTTGATTCTGAAGAGGCAGTTGATAGGGTTTTGCACAAGCCATTTCATGATCTGAATGGTAAGCAAGTAGAGGTGAAGCGTGCACTTCCCAAAGATGCCAATCCTGGTGCAAGTGGCCGTACAGGGAGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAACTCATACGATGGTCGAGTGGATTCTAGTAGGTATATGCAGCCTCAAAGCACTGGGGGTGGATTCCCTCCTTATGGTTCTTCTGGGTATAGTGCTCCTGGGTATGGATATGGTCCTGCAAATAATGGCATGGGCTATGGTGGATATGGAAGTTTTGGTGGTGCCAGCGCTGGTTATGGTGGACCTGCTGGTGCAACCTATGGGAGTCCAAATGTCCCTAATGCTGCTTATGCTGGTGCTCCACCAGGTGCTCCGAGGAGTTCATGGCCTGCTCAAGCACCCTCTGGTTATGGTTCTATGGGCTATGGGAATACTGCTCCATGGGGTGCTCCAGGTGGTGGTGGCCCTGGTTCCGCACCCACAGGCCAATCCCCTAGTGGGGCTGCTGGCTATGGTAATCAAGGCTATGGATATGGTGGATATGGCGGGTATGGTGGAAGTGATAATTCTTTTGGGAACCCAGGTGTATACGGTGCTGTTGGAGGACGTTCTGGGAGTGCCCCAAGTAATGCTAGTGGTCCAGGAGGGACTGAACTTCAAGGGAGTGGAGGCAGCTATAATGGAAGTGGCTATGGTGATGCAAATGGAAATTCCGGATATGGAAATGTGGCATGGAGATCTGATCCAGCACAAGCATCTGGAAATTATGGGACTCCTCAGGGAAATGGCCCTCATGGCGGGCAAGTTGGTTATGGTGGTGGTTATAGTGGGACTCAGTCCCGGCAAGCCCAACAGCAGTAA 1398 0.495 MDSDQGKLFIGGISWETTEDKLKEHFSNYGDVIHASVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISATSRAGNPNSARSAGNGGSIKTKKIFVGGLPPTLTEEKFRLYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDSEEAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRTGSGAGIGGYQGYGASGGNQNSYDGRVDSSRYMQPQSTGGGFPPYGSSGYSAPGYGYGPANNGMGYGGYGSFGGASAGYGGPAGATYGSPNVPNAAYAGAPPGAPRSSWPAQAPSGYGSMGYGNTAPWGAPGGGGPGSAPTGQSPSGAAGYGNQGYGYGGYGGYGGSDNSFGNPGVYGAVGGRSGSAPSNASGPGGTELQGSGGSYNGSGYGDANGNSGYGNVAWRSDPAQASGNYGTPQGNGPHGGQVGYGGGYSGTQSRQAQQQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1885 465 CDD RRM2_Hrp1p 113 190 - -
Bisa02g1885 465 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bisa02g1885 465 Gene3D - 4 85 IPR012677 -
Bisa02g1885 465 MobiDBLite consensus disorder prediction 81 107 - -
Bisa02g1885 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bisa02g1885 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bisa02g1885 465 MobiDBLite consensus disorder prediction 216 239 - -
Bisa02g1885 465 Gene3D - 86 207 IPR012677 -
Bisa02g1885 465 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 465 - -
Bisa02g1885 465 MobiDBLite consensus disorder prediction 371 465 - -
Bisa02g1885 465 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bisa02g1885 465 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bisa02g1885 465 SUPERFAMILY RNA-binding domain, RBD 110 218 IPR035979 GO:0003676
Bisa02g1885 465 MobiDBLite consensus disorder prediction 84 106 - -
Bisa02g1885 465 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bisa02g1885 465 MobiDBLite consensus disorder prediction 384 441 - -
Bisa02g1885 465 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Bisa02g1885 465 FunFam heterogeneous nuclear ribonucleoprotein 1 107 225 - -
Bisa02g1885 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Bisa02g1885 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1885 Bisa-ChrBisa02 38746138 38749289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1885 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.383 8.54e-07 49.7