Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1858 ATGGGGCAAGAACAGTCCAAGAACGAGCTGCTTTACCAGCAAGTTAGTTATGGGAACACCGACGGAATCAAAGCCCTTCGCAGGGAAGGAGCAGGCCTCGAGTGGTTGGACAGAGAAGGAAAGACACCTTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTCGCCAAAACTTTGATAGAACTTGGTGCCAATATCAATGCATACCGTCCGGGTCGGCATGCGGGTACTCCATTACATCATGCGGCTAAAAGAGGCCTTGAAAGTATTGTCAAGTTACTTCTTGTGCATGGAGCCAATCCACTGGTCATGAATGATGATTGCCAAACTGCTCTTGATGTTGCCAGGGCCAAAGGCCACAGTAATGTTGTTCGTGCTGTTGAGAGTCATCTTTGCTTGTTCTCTGGCTGGCTGCGGGAGTTTCATGGACCAGGATTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCTAGGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCTCGTAATCTTACCAGACCCTACAAGCTGGAGCTTGCCATATATTCTAGTTTGCAGGATGCACAACCACGTACAGTTATTGCACTGTGGAAGGCCAACTTAGAAGAACCAAAGCTACACCAGTCAGATCCTTCAGTTACAATTGCTGATATCCCTTCCAAAATACGCATTAAACTTGCGCCTGCAAGTGAGAATGACAAGCAACAACTTAAGTGGTTTTCTGATGCATGCAAAGGAATTCCACAGGAAAATCCATCATTTTTGCACAATAACATGAGAACAGTTCCTCCCACAGCACCGCTAGCTGCAGAAGATCTAGAGATGGCTGCTGCAATCAGAGCATCAATCCAGTCTGCCATGCAGGAGAGGCCACCCCTTGCTGATGCCCAGCCAAACTCTGAAGCAAGTTCAAGTTTAGGAGTTAATACAAGCAAGCATGGTTCGCTTGGTGCACCAAATCCAAACACAAGTGGTAATTTTCCTGTACATGAAGATGGACCAGGCAGCACTTCAAGTCAGCGTGACCATATTCATGACAATGGCCCTGTTTCCCTAAGTTCTAGTGGCTTGGGTTCGATTCCATCGGCTCCTCCAATTGAAGATGAGACTCCATTAGATGGCCCCGTTCATTATCCATCAATTGATTTAAGCCCTGTTGACATATCATCTCCAGCTGTCGAGAAGTCACCTGAAGAAGAAAAAGGTGCTGTTGCAAGTGGTTCATCTTGTGTGATTTGTTTAGATGCTCCAGCGGAGGGGGCATGCATACCCTGCGGCCATGTTGCTGGATGCATGCCTTGCTTGAATGAGGTCAAAGCAAAGAAATGGGGTTGCCCTGTGTGTCGAGCAAAAATCGACCAGGTTATAAAGATATACCACGTTTGA 1389 0.4644 MGQEQSKNELLYQQVSYGNTDGIKALRREGAGLEWLDREGKTPLIVACMNPELYNVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESIVKLLLVHGANPLVMNDDCQTALDVARAKGHSNVVRAVESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVVVLPVGSRNLTRPYKLELAIYSSLQDAQPRTVIALWKANLEEPKLHQSDPSVTIADIPSKIRIKLAPASENDKQQLKWFSDACKGIPQENPSFLHNNMRTVPPTAPLAAEDLEMAAAIRASIQSAMQERPPLADAQPNSEASSSLGVNTSKHGSLGAPNPNTSGNFPVHEDGPGSTSSQRDHIHDNGPVSLSSSGLGSIPSAPPIEDETPLDGPVHYPSIDLSPVDISSPAVEKSPEEEKGAVASGSSCVICLDAPAEGACIPCGHVAGCMPCLNEVKAKKWGCPVCRAKIDQVIKIYHV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1858 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 461 IPR013083 -
Bisa02g1858 462 PANTHER ROLLING PEBBLES, ISOFORM B 392 459 - -
Bisa02g1858 462 ProSiteProfiles Zinc finger RING-type profile. 411 450 IPR001841 -
Bisa02g1858 462 SMART ring_2 411 449 IPR001841 -
Bisa02g1858 462 CDD RING-HC_XBAT35-like 407 460 - -
Bisa02g1858 462 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Bisa02g1858 462 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Bisa02g1858 462 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Bisa02g1858 462 SUPERFAMILY RING/U-box 410 456 - -
Bisa02g1858 462 SMART ANK_2a 39 69 IPR002110 GO:0005515
Bisa02g1858 462 SMART ANK_2a 75 104 IPR002110 GO:0005515
Bisa02g1858 462 Pfam Zinc finger, C3HC4 type (RING finger) 409 456 - -
Bisa02g1858 462 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Bisa02g1858 462 Gene3D - 2 134 IPR036770 -
Bisa02g1858 462 MobiDBLite consensus disorder prediction 298 361 - -
Bisa02g1858 462 MobiDBLite consensus disorder prediction 288 401 - -
Bisa02g1858 462 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Bisa02g1858 462 SUPERFAMILY Ankyrin repeat 7 132 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1858 Bisa-ChrBisa02 37558971 37564385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1858 406 459 C3H Transcription Factor Family AT3G06140 35.185 6.87e-08 52.4