Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1856 ATGGACGTTGACGTAGTTTGTCGCTTGAGCTTTGTCTTCGGCGATTTCCTTACGATTTTTTCACATGGAATGGCAGATCCTGCTAATTATGGGAATCCTGAGCGTGATATTGAGCAAGCACTTATTGCTTTAAAAAAAGGCACTCAGTTACTTAAGTACAATCGAAAAGGGAAGCCAAAATTTCGCCCATTCAGACTCTCACCAGATGCAACAACGCTAATCTGGATTTCTCACGGACGGGAAAAGGATCTGAAGTTGTCTACTGTTTTGCGTATTATCCCTGGACAAAGAACTCCTGTCTTTAGAAGGCACTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTCTTTATAAAAACGGGGAACGATCACTTGATCTGATTTGCAAGGACAAAACAGAGGTAGAGGTATGGTTTGCAGGCCTTAAGGCATTGATTTCTACTGGGCAACAACGTACACTACGAACTAGAAGTGCCTTATCCGATGATAGTGTTGACATTTTGTCAAATAGTCATCCTTTTGGTGCAACATTAGAGTTTACTGCAAGCATTTCCCGTGGTAGGGATTCTACTGATTCAGGATCTCGCGAATCTCCATTGTTTTGGACAACCTCAGATGTGGCATCAGAACGAGCAAATATGCAATTAAGGGCAAGTGCTTCAGATGGATTTCGTGTTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGAGGATCTGGACCAGATGACATAGAGTCACTGGGTGATGTTTATATATGGGGAGAGATTTGGATGGATGGGCTTTCACTTGATGGGTTGGGGAGTCAGGTTCCTTCTGTGATAGATGTGCTAGTTCCTAAGCCGTTAGAGTCAAATGTTGTTCTTGATGTTCAGCAGATTGCATCTGGTGTGCGTCACATTGCTCTTGTCACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGAATCTGGAGGAAGACTTGGTCATGGGATTGATAAAGACTTCTGTCACCCTCATCTTATTGAGTTCCTAGCTACTCACAATGTCGAATTTGTTGCATGTGGGGAGTATCATACATGTGCTGTTTCTACATCTGGTGATCTATTCACCTGGGGAGATGGTGCACATAATGCTGGACTTCTTGGCCATGGCACCAATGTTAGTCACTGGATACCAAAGAGGGTCATTGGCCCTTTAGAAGGGCTTCAAGTTTTATCTATTGCATGCGGCACATGGCATTCAGCATTGGCAACTTCTAACGGGAAACTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATCGCAAGAGTGTGTCATATCCAAAAGAGGTACAATCGTTGAGTGGACTTAAGACAATCAAGGTTGCTTGTGGAGTATGGCACACTGCAGCTATTGTAGAGGTTATGGGTCACCAAGGTTCAAATGTTTCATCAAGGAAGCTATTCACCTGGGGTGATGGCGACAAATATCGTTTGGGTCATGGGAACAAGGAAACCTACCTTCAACCCAACTGTGTCTCTGCACTTATTGATCACAATGTTCACCAGATAGCTTGTGGGCACACATTTACTGTTGCCCTCACTACATCAGGTCATGTATTTACTATGGGAGGCTCTACATATGGTCAACTAGGAAATCCTCTGTCTGATGGAAAAGCACCTGTCCTAGTTCAAGACAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGATCACATCATGTTGCTGTGTTGACATCAAGAAGTGAATTATATACTTGGGGGAGAGGGGCAAATGGAAGATTGGGACATGGAGACATAGAAGACCGGAAATCTCCAACATTGGTAGAAGGATTAAAAGATAGGCATGTAAAAAATATCTCATGTGGTTCAAACTTTACATCTTGTATATGCATCCATAAATGGGTCTCTGGAGCTGATCAATCTATTTGCTCTGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAACTGTGGATTGGTACACTGTCATGCTTGCAGTTCCAAGAAGGCATTGAAAGCAGCATTGGCTCCTACACCAGGAAAGCCACATCGTGTGTGTGATGCTTGTTATAGTAAGCTTAAAGCTGCTGAGGCTAGTAGTACTTCCACCATAAGTAGAAAAGTTACTCCTCCTCGTCAGTCCTTAGATGGCAAGGAAAGATTCGAGCGGGGAGAGGTGAGGTCTTCAAGAATTCTCATGTCTTCCATGACTGAACCAGTAAAATTCCTTGAAATATGGGGTAACAAGCCTGAATGTAAACATGAATTTTCTTCCCTAGCCCGACCTTCTCCATTAGGTTCACAATTCAAAGAGGTTACATTTCCGAGTTCATTGAAGCCCCTTCACAATGCTTTCAAGTCTGCTGCTGTATCTTTAAGTCCACCACGAACTCCACCATCCAATTCAAGACCTGCATCACCATATGCAAGAAGACCAAGCCCGCCACGGACTGCAACCCCTGGATTTTCTAGAAGCATCATTGACAGCTTGAGGAAGACAAATGAGCTTCTGAACCAAGAAGTCTCAAAGTTGCAGAACCAAATTCGAAGTTTGAAGGAGAAGAGTGACAGACAAAGTTCAGAGATTCATAAGCTGCAGAAAAATGTTAAGCAAGCTACTTCATTAGCTGGAGACGAATCTTCTAGGCATAGAGTAGCAAGGGAATTTATTAAGTCCATGATGAATCAGTTGAAAGATGTGACCCAGAATTTGCCACCAGACTTCACGGAGAGTGAACCCTTGAAAACCATGCATACTCAAGCTGAAGATTTTCTGAAAGAAAATCCAGTATCTGAAGCATCTTCCATACTATCAAGTTTGGAGTCTATCCAACAAAATGCACCTGATACATCTGCCTCAGATATTGACGGTTCTAAACCGCAAGACCAAAGACTGGAAGAAACTGTTGATGCTGCTGGAGCTGAACCATCTCATGATGGAGGAAATTCTCTTCAAGAAAGTATCAGATCGTCTGTATCTGGTACAGAGGCAGAAGCTACTTCACAAAGCTCAGAAAATGGTTCACAATCACTGGACACTTCGAGGTCTGGGAGAGAAAGAGAAACACAAGTCATCGAACAATTTGAACCTGGTGTTTATGTGTCACTAATAGTACGGCCAAATGGTAACAAAGTTTTCAAACGAGTTAAATTCAGTAAGCGAAGGTTCGATGAGAATCAAGCAGAGGAATGGTGGAACAAAAACAAAGATAGGGTGTTAAGAAAATATTGTGCACCGGCAACAAATCCTGCAGCTACTGGGTCATCTAGCACAACTCAACCCCAAGCTGAAGCGAACATTGAAGCAGCACCTTCTTCAACCTAG 3336 0.429 MDVDVVCRLSFVFGDFLTIFSHGMADPANYGNPERDIEQALIALKKGTQLLKYNRKGKPKFRPFRLSPDATTLIWISHGREKDLKLSTVLRIIPGQRTPVFRRHLRPEKDYLSFSLLYKNGERSLDLICKDKTEVEVWFAGLKALISTGQQRTLRTRSALSDDSVDILSNSHPFGATLEFTASISRGRDSTDSGSRESPLFWTTSDVASERANMQLRASASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEIWMDGLSLDGLGSQVPSVIDVLVPKPLESNVVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDFCHPHLIEFLATHNVEFVACGEYHTCAVSTSGDLFTWGDGAHNAGLLGHGTNVSHWIPKRVIGPLEGLQVLSIACGTWHSALATSNGKLFTFGDGTFGVLGHGDRKSVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPNCVSALIDHNVHQIACGHTFTVALTTSGHVFTMGGSTYGQLGNPLSDGKAPVLVQDKLVGEFVEEISCGSHHVAVLTSRSELYTWGRGANGRLGHGDIEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGADQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYSKLKAAEASSTSTISRKVTPPRQSLDGKERFERGEVRSSRILMSSMTEPVKFLEIWGNKPECKHEFSSLARPSPLGSQFKEVTFPSSLKPLHNAFKSAAVSLSPPRTPPSNSRPASPYARRPSPPRTATPGFSRSIIDSLRKTNELLNQEVSKLQNQIRSLKEKSDRQSSEIHKLQKNVKQATSLAGDESSRHRVAREFIKSMMNQLKDVTQNLPPDFTESEPLKTMHTQAEDFLKENPVSEASSILSSLESIQQNAPDTSASDIDGSKPQDQRLEETVDAAGAEPSHDGGNSLQESIRSSVSGTEAEATSQSSENGSQSLDTSRSGRERETQVIEQFEPGVYVSLIVRPNGNKVFKRVKFSKRRFDENQAEEWWNKNKDRVLRKYCAPATNPAATGSSSTTQPQAEANIEAAPSST 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 854 885 - -
Bisa02g1856 1111 Pfam Transcription factor BRX N-terminal domain 882 917 IPR027988 -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 528 579 IPR000408 -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 1086 1111 - -
Bisa02g1856 1111 SUPERFAMILY PH domain-like 36 146 - -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 306 IPR000408 -
Bisa02g1856 1111 Gene3D - 36 153 IPR011993 -
Bisa02g1856 1111 Pfam FYVE zinc finger 632 698 IPR000306 GO:0046872
Bisa02g1856 1111 CDD PH_PLC_plant-like 35 147 - -
Bisa02g1856 1111 Gene3D - 471 644 IPR009091 -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 984 1017 - -
Bisa02g1856 1111 Pfam Pleckstrin homology domain 38 146 IPR001849 -
Bisa02g1856 1111 Gene3D - 205 470 IPR009091 -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 936 962 - -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 936 1026 - -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 793 827 - -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 854 868 - -
Bisa02g1856 1111 CDD FYVE_like_SF 642 694 - -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 580 631 IPR000408 -
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 1084 1111 - -
Bisa02g1856 1111 FunFam PH, RCC1 and FYVE domains-containing protein 1 219 467 - -
Bisa02g1856 1111 SUPERFAMILY RCC1/BLIP-II 247 633 IPR009091 -
Bisa02g1856 1111 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 636 698 IPR017455 -
Bisa02g1856 1111 Coils Coil 831 872 - -
Bisa02g1856 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Bisa02g1856 1111 ProSiteProfiles BRX domain profile. 1026 1081 IPR013591 -
Bisa02g1856 1111 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Bisa02g1856 1111 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 478 524 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 413 462 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 581 628 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 527 576 IPR000408 -
Bisa02g1856 1111 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 575 596 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 517 535 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Bisa02g1856 1111 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Bisa02g1856 1111 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 81 902 - -
Bisa02g1856 1111 SUPERFAMILY FYVE/PHD zinc finger 632 704 IPR011011 -
Bisa02g1856 1111 SMART fyve_4 630 699 IPR000306 GO:0046872
Bisa02g1856 1111 MobiDBLite consensus disorder prediction 963 977 - -
Bisa02g1856 1111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 705 IPR013083 -
Bisa02g1856 1111 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1080 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1856 Bisa-ChrBisa02 37495330 37503185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1856 975 1101 Major Intrinsic Protein MIP AT1G31880 28.571 1.32e-08 56.2