LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1845	ATGAACTCCATCGCAATTCACTCCTCCTTCTTCGGCTCACCCTACTCCGATGTCTCGTCGGAATCTTCCTTCGGCCACGACCACTTCCCCTTCAACGAGAACGACCCAGAAGAGATGCTTCTGCTGGGTCTAATTTCAGAGGCAAACAATGCCCAACAATCATGCCAGAGCAGGGTGAAGGAAGAAGAGGTTAGCTCGGAGGCTCCGCCGCCGCCTTCGCTGCCAAGGAAGGAGAAGTCGTACCGAGGCGTCCGGAAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGAGGCATGGGATTAGAGTGTGGCTGGGGACATTTGATAGCGCAGAAGCAGCAGCTTTGGCCTACGATCAAGCTGCTTTCGCCATGAGAGGCTCTGCAGCAATACTGAATTTCCCAGTGGAGAGAGTCAGGGAATCGCTCAAGGGGATGATGACGAACTGTGGCTCTGGGGGAGAAGAAGAAGGGTGTTCGCCTGTGGTGGCCTTGAAGAGAAAACACTCCATGAGAAGGAAAATCAGCAGCAAGAAGATGATCAAAGACAGAGACGTTAGGATCGAGAATGTGGTGGTGTTAGAAGATCTAGGTGCTGATTACTTAGAACAGTTATTGTTGTCATCTGAGAATCCTACTCCATCATTTTGA	660	0.5227	MNSIAIHSSFFGSPYSDVSSESSFGHDHFPFNENDPEEMLLLGLISEANNAQQSCQSRVKEEEVSSEAPPPPSLPRKEKSYRGVRKRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSAAILNFPVERVRESLKGMMTNCGSGGEEEGCSPVVALKRKHSMRRKISSKKMIKDRDVRIENVVVLEDLGADYLEQLLLSSENPTPSF	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1845	219	Pfam	AP2 domain	80	130	IPR001471	GO:0003700\|GO:0006355
	Bisa02g1845	219	PANTHER	DNA-BINDING DOMAIN	54	210	IPR044808	GO:0003700\|GO:0009873
	Bisa02g1845	219	CDD	AP2	79	139	IPR001471	GO:0003700\|GO:0006355
	Bisa02g1845	219	PRINTS	Ethylene responsive element binding protein signature	81	92	IPR001471	GO:0003700\|GO:0006355
	Bisa02g1845	219	PRINTS	Ethylene responsive element binding protein signature	104	120	IPR001471	GO:0003700\|GO:0006355
	Bisa02g1845	219	FunFam	Ethylene-responsive transcription factor 2	79	140	-	-
	Bisa02g1845	219	SUPERFAMILY	DNA-binding domain	80	140	IPR016177	GO:0003677
	Bisa02g1845	219	ProSiteProfiles	AP2/ERF domain profile.	80	138	IPR001471	GO:0003700\|GO:0006355
	Bisa02g1845	219	Gene3D	AP2/ERF domain	79	140	IPR036955	GO:0003700\|GO:0006355
	Bisa02g1845	219	MobiDBLite	consensus disorder prediction	52	82	-	-
	Bisa02g1845	219	SMART	rav1_2	80	144	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1845	Bisa-ChrBisa02	36321250	36321909	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1845	13	214	AP2-EREBP Transcription Factor Family	AT3G23240	57.078	8.01e-73	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa02g1845		AP2	1.9e-14	CL0081