LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1801	ATGGCAAGTTTGAAGCTGATGGAGACTGAGCTGTGTCTGGGACTGGGACTGCCTGGTGGTGGTGGTGGTGAGGTGGAGACTCCAAAGGCCTCAGGGAACAAGAGAGCATTCTCTGCAACTGTTGATCTCAAGCTCACTCTTGTTGATTCCAATCAAGATCTGGTCAATGACAATTTGAAGCACAACATTGCTTCAAAGGACACCAAAACCCTCCTCAAGGACCCTGCTAAGCCACCTCCCAAGGCACAGGTGGTGGGGTGGCCACCAGTGAGGTCATATAGGAAGAATGTGATGGCACAGAAGGCCGTGAACAGTGAAGAAGAGGGTAATAGTAATGGCGATGCCAAGACAACAACTAATACATCAGCAGCAGCATTTGTGAAGGTTTGTATGGATGGTGCACCCTACCTTCGCAAGGTGGACTTGAAGATTTACAGAAGCTACCAGCAGCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAATTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAATTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCTTGGGAGATGTTCGTGGAGTCATGCAGGCGTCTGCGAATAATGAAGGGATCTGAAGCTATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGA	729	0.4883	MASLKLMETELCLGLGLPGGGGGEVETPKASGNKRAFSATVDLKLTLVDSNQDLVNDNLKHNIASKDTKTLLKDPAKPPPKAQVVGWPPVRSYRKNVMAQKAVNSEEEGNSNGDAKTTTNTSAAAFVKVCMDGAPYLRKVDLKIYRSYQQLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCRRLRIMKGSEAIGLAPRAMEKCKSRS	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1801	242	Gene3D	-	119	236	-	-
	Bisa02g1801	242	ProSiteProfiles	PB1 domain profile.	124	224	IPR000270	GO:0005515
	Bisa02g1801	242	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	5	229	IPR003311	GO:0005634\|GO:0006355
	Bisa02g1801	242	Pfam	AUX/IAA family	30	233	IPR033389	-
	Bisa02g1801	242	SUPERFAMILY	CAD & PB1 domains	119	223	-	-
	Bisa02g1801	242	FunFam	Auxin-responsive protein	119	234	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1801	Bisa-ChrBisa02	34367611	34371533	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1801	106	227	B3 DNA Binding Superfamily	AT2G46530	29.508	2.52e-08	52.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Bisa02g1801		AUX_IAA	2.1e-83	CL0072