Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1787 ATGATGGTAGGATTGGAACTCATACCCGTGGGTACAATTTTGGCTGTGCTAACAAGCCAGGTTCTGAAAACAGCTCATGCTGCAGCTGAAGTTCTTGTTGGAAAAGAAATTTTCAAGGTCCTTTCACAGCACCTTTATGACATTGAACCGGTCCTGAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAGGCTGCAAGGATTGCTCTCGAATCTCTTGAAGATGATGTTAAGAGGGCAAATAAAGTGGTTGAGAAATACAGGACCCGCGGTCGGTTTTACTTGCTGGTTAAGTGTAGATACATAGTTGATGAAGTTGAAGAAGTTACCAGGAGCATTGGAAAGTCCCTAGCTGTGCTGTCCCTAGCAAATGCCGAAGTCCTATCGAGAATTTCTGATCAGGTTGATAGATTACAAAATGAGATGCAAAGGGTAGAGTTTGAGGCATCACAATCTCAGCTTCAAATTGTGGACAAGTTAAACCAGGGACTTAGAGAGCAGAAACTAGACCAGGCTTTTGCGAACGACATGCTTGAGGAAATAGCAAGGGCAGTTGGTGTCCCAATTGAGCCGTCTGAGATAAGCAAAGAGCTGGCTAGCTTTAGGAGGGAAAAAGAAGAAGCTGCCAACCGGAAAGAAAGAGCTGAGGTGCTCTTCTTGGAGCAGGTAATTGAGTTACTATCCCGAGCTGATGCTGCCAGAGATTATGAAGAAGTAAAGAAGCAGTACTTCGAAAGGGTTCAGGTGATAGAACGATATGATCCAAGGGAAAAGTGTATAGATCCACTTAATTCTTTCCTTTGTTGTATAACTGGAAATATTATGGTAGATCCGGTCAGCCTTTGCACCGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTGACAATGGCAAGAGGACTGACCCAGAAACAAAAGAGGTACTTGAAGATACCAACTTGAGATCTAACGTTCCACTAAGACAATCCATCGAAGAGTGGAGAGAACTTAATTACTGCCTCACAATTCGGTCCATCAGAGAAAACCTGTTATCAAATTCTGACTCATCTGTCCAAGAATCCCTGAGCCGAGTGCAGGATCTCATAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGGTTACTGACATTATTATCTCTATACTTGGGAGCTCTAGAAACAAAGAAGTGAAGATCAAGATATTGAGTACTTTGAACGATGCAATATCAGGGCACACAAGAAACAAGGAAAAAGTAGCCAAATCTCAAGGATGGGATCACATAGTTTGCTGCTTAGGAAGTGACCCTAGCATTTCGAAGGTAGCAATTAATTTGCTCTGTGAGTTACTGCAAGAGCGGTTCGGTTGGAATGTGTCTCTCTGTAGAAAACTCTCTCAGCATCATAGTGCAATTTTTTTCCTTGTTACCCTTAGAAAGGGTCCAGTGAAGGAGTCAGCTGAGGTTGCAGAAAAGATTTTGATGGAGCTTTTTGACATCGATGAGGGCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCACTTGTTGATCATATGATTCAAGGATCAGAGTCTTCAAGAATATCAATGGCAAAAACCATTGTTAATATGGAACTTAGTGATTCAAATTTAAGACTGCTTGGTGAAGAAGGAGCTATACCTCCTTTGCTTGAAATGCTGTCTGGCAGTATTGAATCGAAAGAACTGTCATTGTCAGCCCTTGTTAAGCTATCGGGTTCTCGTGCCAATAAGGGGATTATTGCTGCATCTGGAGGTGTTCCCCTTATTCTAGAACTAATGTTCTCTCCTCGGATGCGAACGTTCATCACCATCAAATGCTCTGAAATCCTGGAGAAGCTTTCTGCTGATTATGACGGAATTGATTTCTTTATTGATGCAGAAGGGAAACAACTTGAGTTAGATTCCATTATCACCAATTTGTTTGCTCTTCAGCAGATTCCCAATTCAGCCCACAATGTCCGGAAGCCTGCGTTGCGTGTACTTCTTGGGATTTGCAAGTTTGAGAGTGGTTTAGTCAAGAAGGCAGTTCTGGCTGCCAATGGTGTATCTCTAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATCCGAGAAACTGCCATAAACCTGCTCTTTCTTTTCTCCCAACACGAGCCGGAAGGGGTAGTTGAATACCTCTTTAGGCCAAGAAGGCTTGAAGCTTTGGTTGGGTTTCTTGAGAATGACGATAACAATGTGCAGATGGCTGCAGCCGGTTTACTAGCAAACCTCCCGAAATCTGAAACAGAACTCACTATGAAGTTGATTGAGTTGGGTGGACTTGATGCAATCATATGCATTCTGAAAACTGGAACAATGGAAGGAAAAGAAAATGCTCTAAGTGCACTCTTCAGGTTCACAGACCCCACAAACATTGAGTCACAGCGCGATTTAGTCAAGCGTGGGATATATCCTTTGCTTGTGAATTTTCTCCACACTGGTTCCCTAACAGCAAAGGCTAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAACCTCACAGTTGTTGCCAAATCGAGCGGTTGCTGGTGTTTCAGATCCTCACGAGTTCCTCTATGCCTGGCTCACGGTAGCATATGCAGTGTGAATAACACTTTTTGTCTACTTGAAGCACAAGCTTTGCCTGGTTTGGTGAATCTCTTACATGGAGAAGTTGATGCAACTGCTTATGAAGCAATACAGACTCTTTCCACATTGGTTTTGGAAGATTATCCTCAAAGGGGAGCCCGTGTGTTGCACGAGTCGGATGCTATAAGACCCCTTCTGGAGATTCTGACATGGGGGACCGATTCTCTCAAGGCCGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTGTCAAAGGAAATGGTGGAATACTATGGAACAACGGCTAGATTGCGTCTTGTCGGATTAACTGGTATGAACATATATGGAGATGGACACCTGAGGAGAAAGGCCGCTAAAGTATTATCTTTGATAGAACGCTATTCAAAGTCATCATCTGGTGCTGTCTCAGGAATTCTGGAGTAA 3051 0.432 MMVGLELIPVGTILAVLTSQVLKTAHAAAEVLVGKEIFKVLSQHLYDIEPVLKELQLQELNESQAARIALESLEDDVKRANKVVEKYRTRGRFYLLVKCRYIVDEVEEVTRSIGKSLAVLSLANAEVLSRISDQVDRLQNEMQRVEFEASQSQLQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPIEPSEISKELASFRREKEEAANRKERAEVLFLEQVIELLSRADAARDYEEVKKQYFERVQVIERYDPREKCIDPLNSFLCCITGNIMVDPVSLCTGTTCERSAIEAWFDNGKRTDPETKEVLEDTNLRSNVPLRQSIEEWRELNYCLTIRSIRENLLSNSDSSVQESLSRVQDLIRENSINKDWISIGEVTDIIISILGSSRNKEVKIKILSTLNDAISGHTRNKEKVAKSQGWDHIVCCLGSDPSISKVAINLLCELLQERFGWNVSLCRKLSQHHSAIFFLVTLRKGPVKESAEVAEKILMELFDIDEGNISSAAKFGWYKPLVDHMIQGSESSRISMAKTIVNMELSDSNLRLLGEEGAIPPLLEMLSGSIESKELSLSALVKLSGSRANKGIIAASGGVPLILELMFSPRMRTFITIKCSEILEKLSADYDGIDFFIDAEGKQLELDSIITNLFALQQIPNSAHNVRKPALRVLLGICKFESGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNNVQMAAAGLLANLPKSETELTMKLIELGGLDAIICILKTGTMEGKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLHTGSLTAKARAAAFIGDLSMSTPNLTVVAKSSGCWCFRSSRVPLCLAHGSICSVNNTFCLLEAQALPGLVNLLHGEVDATAYEAIQTLSTLVLEDYPQRGARVLHESDAIRPLLEILTWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSKSSSGAVSGILE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1787 1016 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Bisa02g1787 1016 Pfam U-box domain 265 330 IPR003613 GO:0004842|GO:0016567
Bisa02g1787 1016 Coils Coil 198 218 - -
Bisa02g1787 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 728 755 IPR000225 GO:0005515
Bisa02g1787 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1008 - -
Bisa02g1787 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 578 620 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 919 959 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 409 448 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 538 577 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 716 757 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 674 714 IPR000225 GO:0005515
Bisa02g1787 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Bisa02g1787 1016 Coils Coil 128 155 - -
Bisa02g1787 1016 Coils Coil 63 90 - -
Bisa02g1787 1016 CDD RING-Ubox_PUB 266 315 IPR045210 -
Bisa02g1787 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 336 IPR013083 -
Bisa02g1787 1016 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Bisa02g1787 1016 Gene3D - 10 124 IPR036537 GO:0007166
Bisa02g1787 1016 Gene3D - 337 472 IPR011989 -
Bisa02g1787 1016 Gene3D - 473 856 IPR011989 -
Bisa02g1787 1016 SUPERFAMILY RING/U-box 250 331 - -
Bisa02g1787 1016 CDD MLKL_NTD 35 146 - -
Bisa02g1787 1016 SUPERFAMILY ARM repeat 336 720 IPR016024 -
Bisa02g1787 1016 SUPERFAMILY ARM repeat 652 1003 IPR016024 -
Bisa02g1787 1016 Gene3D - 860 1007 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1787 Bisa-ChrBisa02 33689492 33693449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1787 265 973 U-box Gene Family AT1G76390 27.953 2.13e-48 184