Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1647 ATGGCTTCAGCGAGCAGAGCAGCACATTTACTCCCCCAAGTACAAACTTCACGCGCAAGCAATATGAGAACCCATAATACAGAGTCGATCGGCTACAACAAAAATGATCGTCTCCATTCTCTCCTCGAGCAATCCAACGAGTCTTCACCCAATTCTGTCGCCGAGCAAGAGATTACGGCTTACTTATCGAAAATCCAACGAAGTAACTACATTCAACCCTTTGGTTGTATGATCGTCGTGGACGAGCCCACTTTTCGGGTTATCGGTTACAGCGAAAATGCGCGGGATTTGCTAGGTGTTACCCGACAATCGGTCCCGGGTATTGAAATAGAAACTCTTACCATTGGGTCTGATGTTCGAACGCTCTTCGCTCCATTTAGTTCAGTCCTACTCGAAAAAGCATTTGAGACTCAAGAAGTCACACAGTTGAACCCCATTTGCATTCGTTCCAAGAATTCAGGGAACCCCTTTTATGCAATTTTGCATAGGATTGATGTCGGGATTGTGATTGATTTAGAGCCAGCAAAAACAGAAGACCCTGATTCATCCATTACCGGGTTGCTGCAGTCTCAAAATCTAGTTAGGCGAGCAATTTCACAGTTAGCATCACCTCCTGGTAGGCATATTAAGATTTTTTATGATATTTTAGTTGAGAGTGTCAGAGAGCTTACTGGCTATGATAGGGTAATGGTGTATAAATTTCATGAGGATGATCATGGTGAGGTTGTTGCTGAGAGTAAGAGGTGTGACTTGGAGCCTTATATTGGTTTGCATTATCCTGCAACTGATATCCCTCAAGCATCAAGGTTTTTGTTCAAGCAGAACCGAATCAGGATGATTGTAGATTGCCATGCCACTCCTGCTCAGGTGATTCAGGATGAAGATCTTATGCAGCCTCTATGCTTGACTGGATCAACCCTTCGTGCCCCGTATGGATGTCATGCCCAGTATATGTCTAATATGGGCTCAATTGCTTCATTGGTTATGGCAATCATAGTCAATGGAAATGATGAGGAAGGTGTTAGTAATTGTACCTCAATGAAGACGCTGTGGGGCTTGGTCGTTTGCCATCATACTTCAGCTCGATACATCCCTTTCCCTTTGCGCTGTAGGTGTGAGTTCCTTATGCAGACCTTTGGGCTCCAACTAAATCTGGAACTTCAGTTGGCATCACAATTATTAGAAAAAGGAGTTTTGAGGACCCAAACTCTCCTGTGTGACATGCTTCTTCGGGACTTTCCTACTAGTATTGTCACTCAAACCCCTAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTTTACTACCAAGGAAACTACTACCCCTTAGGTGTCACCCCAACCGAGTCCCAAGTAAAGGACATTATTGAGTGGTTACTAGCCTTCCACAAAGATTCCGCAGGCTTAAGTATTGATAGTCTGGCTGATGTAGGGTATCCAGGAGCTGCCTCTCTTGGTGATGCAGTTTGTGGGATGACTGTTGCTTTTATTACTGAAAAGGACTTTCTATTCTGGTTCAGGTCATGTACAAGAAAAGAGATCAAATGGGGTGGTGCAAAGCATAATCTTGAGGACAAGGATGATGGACAAAGAATTCATCCATGTTCTTCATTCCAGGCATTTTCAGAGGTGCTAAATGGCGAGAGTTTCTCTTGGGAGAATGTGGAAATGAATGCAATTCACTCTTTGCAGCTTATTTTGCAAGATTCAGTTAAAGATTCTGAGCATAGAAATTCTAAGCCTGTTGTACATTCCCAACTTGGGTATCAGGAGTTAAAAGGGTTGGTTCATTTAAGTTCTGTGACTAAAGAAATGATTAGACTGATAGAAACTGCAACCGCTCCCATATTTGCTGTAGATGTTGATGGACACATAAATGGGTGGAATGCAAAGGTTGCAGAGTTGACAGGACTCTCGCTTGAGGAAGCTATTGGGAAATCATTGGTTCATGATCTTGTGTATAAGGAGTCTAAAGAAACTGTAGTCAGGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAGGACGTTTGGCCCCGAACATCATAAGATGGCAGTTTATATAGTGGTGAATGCATGCTCTAGCAAGGACTATATAAACAATATAGTTGGAGTATGCTTTATTGGTCAAGATGTTACTGGTCAAAAAATGGTTATAAACAAATTAATTCACTTACAAGGTGACTACAAGGCTATTATACATAACCCAAGTCCGTTGATCCCTCCCATTTTTGCATCAGATGATAACACATGTTGCTCAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGATCGTGAGCATGTCATTGGGAAAATGTTAGTAGGAGAGGTTTTTGGTAGTTTCTGTCAATTGAAGGGTTCAAATGCTCTAACCAAATTGTTGATTGTCCTGCATAATGTGCTCGGTGGACAGGATACAGATAAATTCCCACTCTCATTCCTTAACCGGCATGGAAAATATGTACAAGCTCTCTTGACTGCAAATAAAAGGGTTAACATGGATGGACAAATTATTGGGGCTTTCTGCTTTTTGCAAATTGCAAGTCCTGAACTTCAACAAGCTCTAAAACTCCAACGGCAACAAGAGAAGAACTACTTTAATATGATGAAAGAGTTAACTTACATTTGTCAAGAAATAAAGAATCCTTTAAGTGGTATACGCTTTGCAAACTCTCTTTTGGAGGGTACAAACTTAACTGATGATCAAAATCAGTTTCTTGAGGCTAGTGCTGCTTGTGAGAAGCAAATGTTCAAGATAATACAAGATGTTGATGTGGAGAGCATTGAGAATGGGTCCTTGGAGCTAGAGAAGGGGGAATTCTTACTTGGGAATGCCATTAGTGCAGTTGTTAGCCAAGTGATGATATTGCTAAGAGAAAGAAATTTGCAGTTGATTCGTGATATTCCCGAAGAAATTAAGACTCTGGCCGTTTATGGTGATCAGTTGAGGATTCAACAGGTATTAGCTGATTTCTTATTAAATATGGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTTTGTCCAAGATTAAAACAAATTTCTGACGGACTTACTCTTCTCCATGCTAAATTCAGAATGGTATGCCCCGGTGAAGCCATTATCATTTGCATTACCACAGTCTTTAATCCCTCTAGCAAAAAGGCACCAAGAGTCATTTATGCTCCGGAAGTCCTTAATGTGTATGTAAACATTCCTGAATCCATTGCACATTGCAGACCCGATGAAATCCTCTTGTCCCCAAGCTCTGTAAGATATTGTAATCATGGAACCTACAACCCTTGA 3324 0.4149 MASASRAAHLLPQVQTSRASNMRTHNTESIGYNKNDRLHSLLEQSNESSPNSVAEQEITAYLSKIQRSNYIQPFGCMIVVDEPTFRVIGYSENARDLLGVTRQSVPGIEIETLTIGSDVRTLFAPFSSVLLEKAFETQEVTQLNPICIRSKNSGNPFYAILHRIDVGIVIDLEPAKTEDPDSSITGLLQSQNLVRRAISQLASPPGRHIKIFYDILVESVRELTGYDRVMVYKFHEDDHGEVVAESKRCDLEPYIGLHYPATDIPQASRFLFKQNRIRMIVDCHATPAQVIQDEDLMQPLCLTGSTLRAPYGCHAQYMSNMGSIASLVMAIIVNGNDEEGVSNCTSMKTLWGLVVCHHTSARYIPFPLRCRCEFLMQTFGLQLNLELQLASQLLEKGVLRTQTLLCDMLLRDFPTSIVTQTPSIMDLMKCDGAALYYQGNYYPLGVTPTESQVKDIIEWLLAFHKDSAGLSIDSLADVGYPGAASLGDAVCGMTVAFITEKDFLFWFRSCTRKEIKWGGAKHNLEDKDDGQRIHPCSSFQAFSEVLNGESFSWENVEMNAIHSLQLILQDSVKDSEHRNSKPVVHSQLGYQELKGLVHLSSVTKEMIRLIETATAPIFAVDVDGHINGWNAKVAELTGLSLEEAIGKSLVHDLVYKESKETVVRLLSHALKGEEDKNVEIKLRTFGPEHHKMAVYIVVNACSSKDYINNIVGVCFIGQDVTGQKMVINKLIHLQGDYKAIIHNPSPLIPPIFASDDNTCCSEWNTAMEKLTGWDREHVIGKMLVGEVFGSFCQLKGSNALTKLLIVLHNVLGGQDTDKFPLSFLNRHGKYVQALLTANKRVNMDGQIIGAFCFLQIASPELQQALKLQRQQEKNYFNMMKELTYICQEIKNPLSGIRFANSLLEGTNLTDDQNQFLEASAACEKQMFKIIQDVDVESIENGSLELEKGEFLLGNAISAVVSQVMILLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRLKQISDGLTLLHAKFRMVCPGEAIIICITTVFNPSSKKAPRVIYAPEVLNVYVNIPESIAHCRPDEILLSPSSVRYCNHGTYNP 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1647 1107 FunFam Phytochrome 392 525 - -
Bisa02g1647 1107 Gene3D PAS domain 64 311 - -
Bisa02g1647 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 178 IPR035965 -
Bisa02g1647 1107 PANTHER OS08G0260000 PROTEIN 56 939 - -
Bisa02g1647 1107 MobiDBLite consensus disorder prediction 1 34 - -
Bisa02g1647 1107 Gene3D - 189 548 IPR029016 -
Bisa02g1647 1107 Pfam PAS fold 60 175 IPR013654 GO:0006355
Bisa02g1647 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 609 716 IPR035965 -
Bisa02g1647 1107 Pfam GAF domain 213 387 IPR003018 GO:0005515
Bisa02g1647 1107 CDD HisKA 882 933 IPR003661 GO:0000155|GO:0007165
Bisa02g1647 1107 NCBIfam PAS domain S-box protein 609 727 IPR000014 -
Bisa02g1647 1107 ProSiteProfiles Histidine kinase domain profile. 884 1020 IPR005467 -
Bisa02g1647 1107 ProSiteProfiles PAS repeat profile. 602 673 IPR000014 -
Bisa02g1647 1107 Gene3D PAS domain 601 725 - -
Bisa02g1647 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 750 853 IPR035965 -
Bisa02g1647 1107 SUPERFAMILY GAF domain-like 395 572 - -
Bisa02g1647 1107 SMART gaf_1 208 397 IPR003018 GO:0005515
Bisa02g1647 1107 Pfam His Kinase A (phospho-acceptor) domain 882 941 IPR003661 GO:0000155|GO:0007165
Bisa02g1647 1107 SUPERFAMILY GAF domain-like 188 384 - -
Bisa02g1647 1107 Gene3D - 858 939 - -
Bisa02g1647 1107 Gene3D - 940 1040 IPR036890 -
Bisa02g1647 1107 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 208 377 IPR016132 -
Bisa02g1647 1107 CDD PAS 613 684 IPR000014 -
Bisa02g1647 1107 SMART pas_2 64 131 IPR000014 -
Bisa02g1647 1107 SMART pas_2 604 671 IPR000014 -
Bisa02g1647 1107 SMART pas_2 735 805 IPR000014 -
Bisa02g1647 1107 Gene3D - 392 565 IPR043150 -
Bisa02g1647 1107 Pfam PAS fold 606 720 IPR013767 GO:0006355
Bisa02g1647 1107 Pfam PAS fold 736 855 IPR013767 GO:0006355
Bisa02g1647 1107 MobiDBLite consensus disorder prediction 9 34 - -
Bisa02g1647 1107 ProSiteProfiles PAS repeat profile. 736 788 IPR000014 -
Bisa02g1647 1107 CDD PAS 747 855 IPR000014 -
Bisa02g1647 1107 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 934 1020 IPR036890 -
Bisa02g1647 1107 Gene3D PAS domain 749 857 - -
Bisa02g1647 1107 PRINTS Phytochrome signature 223 242 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 624 639 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 417 437 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 123 145 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 535 553 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 605 621 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 502 521 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 698 715 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 308 329 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 PRINTS Phytochrome signature 718 738 IPR001294 GO:0006355|GO:0009584
Bisa02g1647 1107 FunFam Phytochrome 749 857 - -
Bisa02g1647 1107 Pfam Phytochrome region 400 575 IPR013515 GO:0006355|GO:0009584
Bisa02g1647 1107 SMART HisKA_10 877 941 IPR003661 GO:0000155|GO:0007165
Bisa02g1647 1107 FunFam Phytochrome 598 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1647 Bisa-ChrBisa02 29462371 29471516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1647 13 1041 Histidine Kinase Gene Family AT2G18790 66.667 0.0 1461