Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1635 ATGAAGACGCGAACGACATCGTACCCAAGTAGTCAATCCGACAATCACTGTTTCTTTTTGTTCGTCGTTGGTCCAGTGGAAAATATCGCCCATCTGGACCAACAGACCGAAACGGACGAAACACTGGCCAAGCTGGATAGGCACAGAGGTGACCGCTATGGCAACAACCACGGTTTTGACACCTATCGTCACTCCAGAGCTCCCTCCCGCTTCTCCGATGCTCCCTTCAACCGCCCCGGTGGCTTCCGCTCTGGCGGTGGCGCTCACCACCGTCATTTTGACAGTTCACCTCGTCCATCTCCCGGAAGAGATGCAGGGTTCCGACCATCGGGTGGCCGCGGCAGCGATGGTTTCAAGCCATTGAGTGGGGAGGGTCCTGGAGGGTTTGGGTTTAACGGTCGTCAGGTACAACCACTCTCTGGTCAAAAACGAGGGTTTCCCTTCTCCGGACGCGGAGGGTCGCCAGATTGTTCTGATGGAAGAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCACGGACAGCAACTGAAGAAGATATTCGACCTTTATTTGAGGAACATGGGAATGTGATCGAGGTTGCTCTGATCAAAGATAAAAGGACAGGACAGCAGCAAGGTTGTTGTTTCATAAAGTATGCTTCCCCTGATGAAGCTGATAGGGCAATCAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTATTGGTCCAATCCAAGTGAGATATGCTGATGGCGAACGAGAACGCCTTGGTGCAGTTGAGTTCAAATTATTTGTGGGCTCTCTGAACAGACAGGCTACAGTGAAGGAAGTTGAGGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAGCAAAGCCGTGAATGTTTTGTTTTGGTGGGGAGGGGAATTGTTTTTGTGTTCCTGCCTTCTAATTGTTGTTCTCGGGGAAGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCACTGGCAGCTATAAATGCACTTAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAACTGTCCGATTTGCTGATCCTAAGAGACCTCGGCAAGGGGACTCAAGGGATCCTGCATTGGGTTCAAGATTTGAATCACCAGGTCCTAGAATTCCCTCCAATCTTACTGATCGTATGGGTGAACGAGCATCAGCCCCTGATGCCTGGCGTCCAATGCATCCACCAAATTTGGGGCCATCCTCTAACACTGGTCTTCATAGCATGAGGCCTCCATTAATTCCAAAATCTGATGACATGGATATGGCATTGTCTATGAATGCAGGTGGTCCTACAAGTGGTATTAGAGGCCCCTCAGATGGTCTTTTTAAAAGGCAGGCTCTGTCGTCAATGTCACAACAGAATTTCAATCAACCCATGCCACAAATTTCACCAGCTGGCCAACAAATATCGCCATTGCAGAAGCCTATTCAATCACCTCAGGACAAGCCACCTTCCCTCCAGCTGTACCCTTCAGTCCCAATGCCCTACTCACTAACACCGTCTCCTGCATATCTTAGTCAGGTTGGCCAGCCACAAATTCCTGAGTCTGCTGGTCCTCTTCCTTCACAGCTAGTACATGGCATAAGTGGACAGTTTCCAGTTTCTCAGCCTCAAGTTCAGCAGAGTCCTTCATCTGCTGCAATAACCCAGAGCCAGGCCCCTCTTGATACCTGCTTACAAACTAATACAACATTGACCACTCCAAATCAACAGCAACTTTCTACCTCTATGCAGCAGCAGCCACTTCAATCAACTCAGCAGTACCCATCTCAGTTGGCGCAAATGTTGTCACAACGAACTCATACTTTGCAAGCAAGCTTTAATTCATCTCAGCAGGCCTTCTCTCATCTTCAACAAAAACTACAGATGATGCAACCATCTAGTCAAGGTTTAACATTGCAGCAAAATGAAGAATCTATGAAAAAGCAGTTGCAATGGATGGGGGCTGTACCCCAGGCAGTGGCCAGCAGCCCTGCTGGTGCACCAGCTGCAGATGTGCGTTCATCCACATCTGTTGCTTCTGCTGTACCTGCAAAAAGTAATTGGACAGACCACATATCTCCTGAAGGCTTCAAGTACTATCACAATAGTGTCACTGGTGAAAGCCGGTGGGAGAAACCTGAGGAGTTGATATCATCTGAACAGCAAAAGCAACAGCAAATGCTATCTGTTCAGCAATCTCAAAGTCTGTCACAGCATCCAATGTCACCTGCTCAGCCACTTCCGCAAATGCTACAGTTGCAGCCTCAAGGTCATATGCAGGGACAGGCTCACCCCCAGCAGCTGGCATATGGAGGTCATCAAAATATTCAGGGGATCTATGCTATGCAAGAGTGGATGTGGAAAAATAAGCCAGCAGGAATTTGA 2400 0.4771 MKTRTTSYPSSQSDNHCFFLFVVGPVENIAHLDQQTETDETLAKLDRHRGDRYGNNHGFDTYRHSRAPSRFSDAPFNRPGGFRSGGGAHHRHFDSSPRPSPGRDAGFRPSGGRGSDGFKPLSGEGPGGFGFNGRQVQPLSGQKRGFPFSGRGGSPDCSDGRSFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFIKYASPDEADRAIKALHNQHILPGGIGPIQVRYADGERERLGAVEFKLFVGSLNRQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRECFVLVGRGIVFVFLPSNCCSRGRCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRDPALGSRFESPGPRIPSNLTDRMGERASAPDAWRPMHPPNLGPSSNTGLHSMRPPLIPKSDDMDMALSMNAGGPTSGIRGPSDGLFKRQALSSMSQQNFNQPMPQISPAGQQISPLQKPIQSPQDKPPSLQLYPSVPMPYSLTPSPAYLSQVGQPQIPESAGPLPSQLVHGISGQFPVSQPQVQQSPSSAAITQSQAPLDTCLQTNTTLTTPNQQQLSTSMQQQPLQSTQQYPSQLAQMLSQRTHTLQASFNSSQQAFSHLQQKLQMMQPSSQGLTLQQNEESMKKQLQWMGAVPQAVASSPAGAPAADVRSSTSVASAVPAKSNWTDHISPEGFKYYHNSVTGESRWEKPEELISSEQQKQQQMLSVQQSQSLSQHPMSPAQPLPQMLQLQPQGHMQGQAHPQQLAYGGHQNIQGIYAMQEWMWKNKPAGI 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1635 799 SUPERFAMILY RNA-binding domain, RBD 164 294 IPR035979 GO:0003676
Bisa02g1635 799 MobiDBLite consensus disorder prediction 455 496 - -
Bisa02g1635 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 245 IPR000504 GO:0003723
Bisa02g1635 799 ProSitePatterns WW/rsp5/WWP domain signature. 693 718 IPR001202 GO:0005515
Bisa02g1635 799 MobiDBLite consensus disorder prediction 46 67 - -
Bisa02g1635 799 SMART rrm1_1 256 354 IPR000504 GO:0003723
Bisa02g1635 799 SMART rrm1_1 165 241 IPR000504 GO:0003723
Bisa02g1635 799 MobiDBLite consensus disorder prediction 353 505 - -
Bisa02g1635 799 FunFam flowering time control protein FCA isoform X2 158 250 - -
Bisa02g1635 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 299 IPR000504 GO:0003723
Bisa02g1635 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Bisa02g1635 799 CDD WW 690 720 IPR001202 GO:0005515
Bisa02g1635 799 ProSiteProfiles WW/rsp5/WWP domain profile. 687 720 IPR001202 GO:0005515
Bisa02g1635 799 MobiDBLite consensus disorder prediction 724 753 - -
Bisa02g1635 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 358 IPR000504 GO:0003723
Bisa02g1635 799 Pfam WW domain 691 718 IPR001202 GO:0005515
Bisa02g1635 799 PANTHER RNA BINDING PROTEIN 122 640 - -
Bisa02g1635 799 MobiDBLite consensus disorder prediction 46 157 - -
Bisa02g1635 799 SMART ww_5 688 720 IPR001202 GO:0005515
Bisa02g1635 799 MobiDBLite consensus disorder prediction 715 753 - -
Bisa02g1635 799 SUPERFAMILY WW domain 692 723 IPR036020 GO:0005515
Bisa02g1635 799 Gene3D - 675 742 - -
Bisa02g1635 799 Gene3D - 157 252 IPR012677 -
Bisa02g1635 799 Gene3D - 253 366 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1635 Bisa-ChrBisa02 29027095 29046541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1635 162 383 Eukaryotic Initiation Factors Gene Family AT1G71770 24.255 7.13e-11 63.9