Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1613 ATGGCTCGTGTTCCTTATCCATATGGCGATCCTTTTCTTGGTGGTTCAATAGTTTCTTATGGACCACAAACTATGAATCAACCCCAAATGGTGCCTCAGATGCTGGGTTTAGCATCTACCAGAGTTGCATTACCGCTTGATCTTGCAGAAGATGGACCCATTTATGTCAATGCAAAACAGTACCATGGAATACTAAGAAGACGACAATCACGAGCGAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGCAAGCCATATCTCCATGAGTCTCGGCACCGCCATGCTTTGAAGAGGGTTAGGGGATCTGGGGGACGTTTTCTCAGTACCAAACAGCTTCAACAGGCCAATGCTGAGTTTGTCCCTGGTGTCAATTCTGGCTCCGAGTCCATTAACTTCTATCAAAAGAAAGAGACATCAGAGGTGGAGATTCATCCCTCAAGGACCGCTGAAAATGCATCTTCTATTTCAACCTGCTCTGACATGACAAGTGTGTCCAGTAACAACGTCAATTTTAGGCAGCCTGAGCGCAAGTTTTTGGGGAACTCTTCAAACATGGGCGGTGCATCACAATGCAGCGGGGGACTTACCTTCGGTGGGACCCAGCAGTGCGCCCCGATTGTCCGGTGA 630 0.4762 MARVPYPYGDPFLGGSIVSYGPQTMNQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSTKQLQQANAEFVPGVNSGSESINFYQKKETSEVEIHPSRTAENASSISTCSDMTSVSSNNVNFRQPERKFLGNSSNMGGASQCSGGLTFGGTQQCAPIVR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1613 209 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Bisa02g1613 209 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 176 IPR001289 GO:0003700|GO:0006355
Bisa02g1613 209 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Bisa02g1613 209 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Bisa02g1613 209 Gene3D - 50 112 - -
Bisa02g1613 209 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Bisa02g1613 209 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Bisa02g1613 209 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1613 Bisa-ChrBisa02 28535792 28537070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1613 2 116 CCAAT-HAP2 Transcription Factor Family AT1G17590 61.538 5.20e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bisa02g1613 CBFB_NFYA 3.9e-27 No_clan