Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1541 ATGGCTGATGTCACCTACCTTTGCCTCCACGACTTGGATGATGATCCTCACCTTCCTCGCCGAAACGTAACTTTAGATTCCATTCTTTACTGGTCCTGTAACGATTTGGATTTGGATTTGGATTTCTATGCTTCTGATCCTGAATCTCCCCCGGCTGTTCCCTCCCGCCATGCCAACGTCGAGGACGACTTCTCTGAACAACTTGAATCCACTCTCTGTATACGAGGCGAGAACGACTTCTCCGACTCTGGTTCCGTCCTCAATACCGATCTGTTGGATCGAGAAAACCAGGTAAATTTTGTTATGGATCTACTTCAACAACCTGTTGAGCTATCGCCGGTCTTGGGTCAGAGCGATTCGCTCTCCGAAGCGCTTAATGATTCAGATTTTGGTGTTCTTGACGGGCATAGTGATGAGTGTGTGGATGGCTTGGGGCTGGATTTGGAGTTAGGGTTAGGATTTGGTTTCGACAGGGATTCTTTGCATGGGCAAAATTGTGGGTTCATTGTTGGAAATTGTGGCGATGCTGATGGTTCCTTCGTTGGGAGGAGGGTTTCTGGATATGACTCCGGTGAGGCAACGTCCACGGCAAGTGAGATGCAACCTATTGAGAACTCTGTCCAGCTTGTAGGGTCTGGTTCGGATTCTGGTGAGGAGGAGAATGAGGCCTTGCGTATTTGTCTGCATTCTGACGACGAGTATAATCTGCACGACGTGAACGACGATGTTGCGGGAGCCCCTCTTTGTTGGGATTCACTTCATTTGGAGGATAATGGGGAGAATAATGAAGATTTTGAGTGGGAGGAAGTGGATGGTCGAATTGATGAGAGGGAGGTTCTGAGCATGATCACGGCTGAGGATGATAGGTCTGTTTCAGTTTCCATATCGCCAACAATTGGGCTTGAAGAAGAAGTAAATGTTGTGCAGGTGAGAGGAGGCATGGAAAATTTGGAGTGGGAAGTGCTGTTGAATACCAATATATTAGATGCAAATCCTGATTTGGATCAAGATGATTACATTAATACTGCAGAGTACGAAATGATGATTGGTCAATTTGCTGAGAACGAGAATCCCTTAACGGGTAGGCCTCCAGCTTCTATAGCTGTTGTCCAGAATCTTCCATCAGTGATGGTGACCAAAGATGATATGGAGAACAATAACGCACTCTGTGCAATTTGTAAGGATGAATTTACTGTTGGGAGACGAGCAAAACACTTACCATGTTCACATCGCTACCATGGTGATTGCATTACACCATGGCTGGCCATTCGGAATACTTGTCCTGTGTGTCGCTATGAATTTCCTACTGATGATGCTGATTATGAGCATAGGAGGGCATCTAGCCGGAGGCTGTGA 1356 0.4653 MADVTYLCLHDLDDDPHLPRRNVTLDSILYWSCNDLDLDLDFYASDPESPPAVPSRHANVEDDFSEQLESTLCIRGENDFSDSGSVLNTDLLDRENQVNFVMDLLQQPVELSPVLGQSDSLSEALNDSDFGVLDGHSDECVDGLGLDLELGLGFGFDRDSLHGQNCGFIVGNCGDADGSFVGRRVSGYDSGEATSTASEMQPIENSVQLVGSGSDSGEEENEALRICLHSDDEYNLHDVNDDVAGAPLCWDSLHLEDNGENNEDFEWEEVDGRIDEREVLSMITAEDDRSVSVSISPTIGLEEEVNVVQVRGGMENLEWEVLLNTNILDANPDLDQDDYINTAEYEMMIGQFAENENPLTGRPPASIAVVQNLPSVMVTKDDMENNNALCAICKDEFTVGRRAKHLPCSHRYHGDCITPWLAIRNTCPVCRYEFPTDDADYEHRRASSRRL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1541 451 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 286 435 - -
Bisa02g1541 451 SMART ring_2 390 430 IPR001841 -
Bisa02g1541 451 SUPERFAMILY RING/U-box 371 437 - -
Bisa02g1541 451 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Bisa02g1541 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 437 IPR013083 -
Bisa02g1541 451 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
Bisa02g1541 451 FunFam E3 ubiquitin-protein ligase RING1-like 351 437 - -
Bisa02g1541 451 Pfam Ring finger domain 390 431 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1541 Bisa-ChrBisa02 26876096 26877451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1541 247 437 C3H Transcription Factor Family AT5G60820 48.585 1.47e-53 183