Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1537 ATGGAAAAGCTTGGAGATGATATGGCTGCCCTCAACTCGGTCAAAGCTAATAAGTTCTCTGCTTCATCTTTTCCAGCGACACCATTTGTTTTTTCTGAAGGAAACTCACGATTAAAGACAAGTCTGAAGCTCAATAGTATATCTCTCTCTTCTTGGCTCTACGTCATCTTCATTAAGGAAACCACTCAGAGCTCAGTTCATACAAATATGTCGTGCGTTCCCGACTCCCCAAACAAACGACTCAAAACCCAAATCGAAGAGGAACCCAATGACCAGCTCGACTTGAGACAATCGACTGGGGACAACAACCCTGATTCTTGTGGGATTTGCTACGCCGACCATGAGGTTTCAATTAGAGGTGAAATTGATTGCTGCAATCACTATTATTGCTTTGTCTGCATCTTGGAATGGTCCAAGCATGAGTCTCGGTGCCCTCTATGTCGCCAGAGATTCTCCACCGTTCGCCGCCCGCCTAAGCCCGGCGTCTTCCCTTCCTCACGCCTTGTTAACGTCCCTGTTCGTGACCAGGTTTACCACGTTCATGGAAATATGTCAACTGGTCCTGTTGATCCTTACGCTGAAACTCTGTGTAGTGTCTGTAATGGTGGGAATGATGAAAGTTATCTTCTACTATGCGATCTTTGCGATACTGCTTCTCATACATACTGTGTTGGCCTTGGACATACCGTGCCTGAAGGTGATTGGTTTTGCCATGATTGTACTGTTTCTAAGGCAACTAATGACAACCATGAAATAGACCATCAAAGTGATATGTCAACAGCTGTGTCAAGTGTGACAATCCTTGATATTGTAAGAGAACCAAACAGCCAGGTGGTTAGAAGACCAATACCTTCTCCTTCTTTTATCCCTTTACCTGATAGGGTGAATGGAAACAAAGATATAAATCCGGAGTCAGGTGCAAGAACATTGCGCCAATGTCGCAATGTGCAGCATAGGATTCAAACTTTGCGGGAAAATTGGAATGCTTTGAGAAGTGGTTCATTAATGTTCACTACTAATTCATCTGATTCTGGTGCCATGCATGGTCGAAAACAAGATTTTCATTCCTTGTCACATGGAAAATCAAATCATTCATATTCTTTGGCTTCTACAAGCCGTCAGCCATCCACAATTGAAGCTAGTCCTTGTAGTAATGCGTCACATGAGAGAAGCTCCGAAGATGTTGACAAGGCTTGGAAAATGATGGAGAGAGCAAAGATGATGCAAAAGAATAATCCAAGAACCGTTATTCTTCACAGGGGACTGGATCATACTTCAAGGGGTGCAGGACCTAGAAAAGCATCAAGCATTCATTGTAATAACCAAGAACTGAAAATAGGACAATCTAGTAGGTCCACTGGAATGAAGCAGTACAACTATTCTACTTACAGCAAGGATTTGGTCAATTTTCAGCATCCAGAGTCAGACGAGCAAAAATATAGTAGGGTCACATGTAAGGAGATGATACATCATATTAGGCACCAAGCTTCTCATTTAGAAGAATACTGTGAAGCTTCATTGCCTAGAAAAGTTCATAGTAGCATTCATAGTGCTCCCTGTCATGAAAATGGGGAGAGAAATTTTGCTAAGGAGAAAGGCAGGTCTTCTTGTTCAGTAACTTCAAGAGGTTCAGCTCCTTCTCATGGCGAGTTTGGTAGTGTTTCTTCCTCTAGTAGGGAGGTGGATAAAAAAAGGAGTTTTGCTGAAAGTTCTGGGGATGTAAACACAAGAGTAAGTGAAGATGTGAAAAACGAGATCAAATCTCTTGTCAAGCTCAATCTGAAGGCCCTAAATAAAGATAAACGATTAGGTGTTGATGCATTCAAGGAAGTTGCAAGGCAATCAACCCACACCATCATGGCTGCATGTAGATCAGAGCAGCAGAAGTCTGAGACAGTCCTCTCCAGCTGTGTGTGCAGTCACTGGAACGATATTCAGCAGTTTCATAGGTCCACTTTAATGCCTAATTGTTGCCGACAATGCTTTTACATGTTTGTAAAGAATGTTGTCAACTCCATTATGTTGCAGAAAGTGGGCTGTTCCGGATCTTCTTGTGGCACCTTATTGTAA 2070 0.4261 MEKLGDDMAALNSVKANKFSASSFPATPFVFSEGNSRLKTSLKLNSISLSSWLYVIFIKETTQSSVHTNMSCVPDSPNKRLKTQIEEEPNDQLDLRQSTGDNNPDSCGICYADHEVSIRGEIDCCNHYYCFVCILEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVNVPVRDQVYHVHGNMSTGPVDPYAETLCSVCNGGNDESYLLLCDLCDTASHTYCVGLGHTVPEGDWFCHDCTVSKATNDNHEIDHQSDMSTAVSSVTILDIVREPNSQVVRRPIPSPSFIPLPDRVNGNKDINPESGARTLRQCRNVQHRIQTLRENWNALRSGSLMFTTNSSDSGAMHGRKQDFHSLSHGKSNHSYSLASTSRQPSTIEASPCSNASHERSSEDVDKAWKMMERAKMMQKNNPRTVILHRGLDHTSRGAGPRKASSIHCNNQELKIGQSSRSTGMKQYNYSTYSKDLVNFQHPESDEQKYSRVTCKEMIHHIRHQASHLEEYCEASLPRKVHSSIHSAPCHENGERNFAKEKGRSSCSVTSRGSAPSHGEFGSVSSSSREVDKKRSFAESSGDVNTRVSEDVKNEIKSLVKLNLKALNKDKRLGVDAFKEVARQSTHTIMAACRSEQQKSETVLSSCVCSHWNDIQQFHRSTLMPNCCRQCFYMFVKNVVNSIMLQKVGCSGSSCGTLL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1537 689 MobiDBLite consensus disorder prediction 557 574 - -
Bisa02g1537 689 MobiDBLite consensus disorder prediction 516 574 - -
Bisa02g1537 689 SUPERFAMILY RING/U-box 106 162 - -
Bisa02g1537 689 SMART PHD_3 196 241 IPR001965 -
Bisa02g1537 689 Pfam PHD-finger 197 242 IPR019787 -
Bisa02g1537 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 156 IPR013083 -
Bisa02g1537 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 266 IPR013083 -
Bisa02g1537 689 Pfam Ring finger domain 105 148 IPR001841 -
Bisa02g1537 689 PANTHER F18C1.6 PROTEIN 70 678 - -
Bisa02g1537 689 CDD RING-HC_Topors 104 151 - -
Bisa02g1537 689 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Bisa02g1537 689 MobiDBLite consensus disorder prediction 533 556 - -
Bisa02g1537 689 ProSiteProfiles Zinc finger RING-type profile. 107 148 IPR001841 -
Bisa02g1537 689 MobiDBLite consensus disorder prediction 341 394 - -
Bisa02g1537 689 ProSiteProfiles Zinc finger PHD-type profile. 194 243 IPR019787 -
Bisa02g1537 689 MobiDBLite consensus disorder prediction 359 388 - -
Bisa02g1537 689 SUPERFAMILY FYVE/PHD zinc finger 183 243 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1537 Bisa-ChrBisa02 26832182 26837949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1537 169 244 C2H2 Transcription Factor Family AT3G01460 29.870 2.61e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa02g1537 PHD 2.4e-09 CL0390