Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1529 ATGGGGAGGGGAAGAGTGCAGCTGAGGAGGATCGAGAACAATATCAACAGGCAGGTCACCTTCTCCAAGAGGAGGTCTGGTCTCCAGAAGAAAGCCCACGAGATCTCTGTCCTCTGCGATGCCGAGGTTGCTCTTATCGTCTTCTCCACCAAAGGCAAGCTCTCCCAATACTCCAGCGACCCCTGCATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCGGAAAGGCAGCAAGTTGCAGCTGATAAGTCCCAAAATGAAAACTGGACTCTAGAACACGCAAAGCTTAAGGCTAGGATGGAGGTCCTACAAAGAAATCAAAAGCATTTTATGGGAGAAGATCTGGAAGGCCTAACTCTCAAAGAGCTTCAGAATGTGGAGCATCAGCTTGATTCTGCTATCAAACATATTAGAACCCGCAAGAACCAACTCATGTATGAGTCAATTTCAGAGCTTCAGAAAAAGGATAAGAAACTCCGGGATCAAAACAACTTGCTGGCTAAAATGATTAAAGAGAAAGAGAAGGCCATGGCCCAACAGGCACAAATAGATGAGCAGCAAAATCCTAATCATCATGTTCATGATATTGATGCCTCTGTCATTGTAACGCAGCCCTTCAAAATTAATGGAGGATCCCCAGAAACAAGAGGTGGTGGAGATAGGAATAGACCTCATGCTCCAGCTAGCCCATTGCTTCCTCCTTGGATGCTTCCTCATATGAATGAATAG 735 0.4544 MGRGRVQLRRIENNINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLSQYSSDPCMERILERYERYSYAERQQVAADKSQNENWTLEHAKLKARMEVLQRNQKHFMGEDLEGLTLKELQNVEHQLDSAIKHIRTRKNQLMYESISELQKKDKKLRDQNNLLAKMIKEKEKAMAQQAQIDEQQNPNHHVHDIDASVIVTQPFKINGGSPETRGGGDRNRPHAPASPLLPPWMLPHMNE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1529 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bisa02g1529 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 Coils Coil 88 108 - -
Bisa02g1529 244 MobiDBLite consensus disorder prediction 210 244 - -
Bisa02g1529 244 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Bisa02g1529 244 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Bisa02g1529 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Bisa02g1529 244 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g1529 244 Coils Coil 154 188 - -
Bisa02g1529 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g1529 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa02g1529 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1529 Bisa-ChrBisa02 26561920 26568748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1529 1 213 MADS-box Gene Family AT1G26310 56.444 3.03e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa02g1529 K-box 2.6e-27 No_clan