Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1528 ATGGGAAGGGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAATAGGCAAGTCACATTCGCAAAGAGAAGGAATGGGCTTCTCAAGAAGGCTTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTCTACGAGTTCTGCAGTGGCCCGAGTATGATGAAAACACTTGAGAAGTACCAGAAGTACAGTTATGGCGCACTAGAGTCCAATCAGCCTGTGAATGATTCTCAGAGTAGCTACCAGGAATATTTGAGACTAAAAGCTAAGGTTGAAGTCCTCCAACGTTCTCAAAGGAACCTTCTTGGGGAAGATCTGGCCCAAATGAATACAAAGGAGCTGGAGCAGCTTGAGAATCAAGTGGAGGCAGCACTGAAGAATATTAGGTCCACAAAGACTCAATACATGCTTGACCAGCTTGCTGAACTTCAGAACCGGGAAAGAGTGCTTGATGAAACTAACAAAGCTTTGAGGAGTAAGTTGGAAGAAAGTAGCAACCCAGAGGTTCCAGTGAGACTGGGTTGGGATGGTGCAGGAGGGTCTGATCATATGCATTACACTCGCTTTCCTCCTCATTCTGAAGCATTTTTCCAGCCTTTGGGAGTCAATCCCAATTTGCAAATTGGATATAACCAGATGGGACCAGATGATGTAAATGTTGGAGCTTCATCCTTAAGCAATATTCATGGATACGTGTCTGGGTGGATGCTTTGA 744 0.4556 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMMKTLEKYQKYSYGALESNQPVNDSQSSYQEYLRLKAKVEVLQRSQRNLLGEDLAQMNTKELEQLENQVEAALKNIRSTKTQYMLDQLAELQNRERVLDETNKALRSKLEESSNPEVPVRLGWDGAGGSDHMHYTRFPPHSEAFFQPLGVNPNLQIGYNQMGPDDVNVGASSLSNIHGYVSGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1528 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 FunFam MADS-box transcription factor 1 13 89 - -
Bisa02g1528 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa02g1528 247 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bisa02g1528 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Bisa02g1528 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa02g1528 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g1528 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Bisa02g1528 247 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa02g1528 247 Coils Coil 150 170 - -
Bisa02g1528 247 Coils Coil 117 144 - -
Bisa02g1528 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1528 Bisa-ChrBisa02 26485466 26491018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1528 1 247 MADS-box Gene Family AT5G15800 54.015 4.05e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa02g1528 K-box 3.1e-27 No_clan