Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1509 ATGGCGAAATCTGCCACTCCAGACGCGATCTCCATATTGTTTGCAAATCCCTCACCGGATTCTTCCTCGGAGCTTCCCGAGATCGTCGTCCAAGTTCTGGATCTCAAGCAGAGCGGTAACCGATACATGTTCGCTGCTAATGATGGAAAGATGAAGTTAAGGGCGATTCTCCCTTCGAATCAGAATTCTCAGGTGATTTCTGGAAATATTCAGAACCTGGGTCTTATCCGCATTGTTGACTATACTCTCAACGACATCCCAAATAAGTCAGAGAAATATCTTATTGTCACAAAATGCGAACCGGTCTCTCCTCCACTTGAAATGGAAATAAAACTAGAAGTCAACGGACAGAACGCCGGAATTATTTTGAACCCCAGGCAAGAGGGTGAAATCAAAAGAGAGGTGAAAAGTGAAGAAACTGGCTTTGTTTTGAAACCAAAGCAAGAAATAGTGGCTAAATCTGCTGCTCAGATTGTACACGAACAACATGGAAATATGGCCCCTACAGCACGAATGGCCATGACGCGCCGGGTGCGTCCTCTTGTTTCCTTAAATCCTTACCAGGGTAATTGGACAATAAAGGTTCGTGTCACAAGCAAAGGCAATATGCGCACCTATAAAAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTGGAACTGACAGATGAGGATGGCACCCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGGAAATTTTATGAGAAATTTATGCTAGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAAAGTTGCTAACAAACAATTCAAAACTGTCCAAAACGATTATGAAATGACATTGAACGAGAATTCTGAGGTGGAAGAGGCGACCAACGAAGAAAGTTTTGTTCCAGAAACAAAGTTTAAGTTTGTCCAGATTGATGAGCTGGGTCCTTTTGTTAATAGGAATGACCTTGTTGATGTAATTGGAGTTGTTCAGAATGTGTCTTCCACAATGAGCATTCGTAGGAAGAGCAACAATGAGAGCATTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACGGTGGTTGTGTCTTTGTGGAATGAGCTTGCAACTAATGTAGGACAAGAGTTGCTGGACATTGCTGATAAATCTCCAATAGTTGCAATCAAATCCCTCAGGGTTGGGGAGTTTCAAGGTGTTTCATTGTCAACTATTAGCAAAAGCTTGGTTCTGATAAATCCTGATTTACCTGAATCCAAAAAGCTTAGATGCTGGTACGAGTCTGAAGGCAAAGATGCTTCAATGGCTTCTGTAGGCTCTGACTCAACTCCCACATCCAAAAATGGAATGAGATCAGTATACTCTGACCGTGTTTCACTAACTCAAATAACCTCAAACAAATCCTTGGGAGAGGACAAGCCCGCATTTTTCAGTATCAGAGCACATATAAGCTTTATCAAGCCTGACCAGACAATGTGGTACCGGGCATGTAAAACTTGCAACAAGAAAGTCACTGAAGCCATTGGCTCCGGGTATTGGTGTGAAGGCTGCCAGAAAAATGTAGAGAGCAGTTTAAGATACATTATGGTTGTAAAAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCAGTCTTCAATGAAGAAGCTGAGGCAATTGTTGGGTGTTCTGCTAATGAGCTTGATAGCCTAAAATCGCAGGAGGGAGAAGATAATCCTTATCAGATGAAATTGAAACAAGCTACTTGGACCCCTCATCTTTTCCGGGTTAGTGTTTCTCAGAATGAGTATATGAACGAGAAGAGGCAGAGGATAACAGCCCGAGCAGTTGCTCCTGTTGACTTTGCTGCTGAGTCAAAAATTCTCCTGGAAGAGATTTCAAAGATGAGAGTTTCTTAG 1872 0.4199 MAKSATPDAISILFANPSPDSSSELPEIVVQVLDLKQSGNRYMFAANDGKMKLRAILPSNQNSQVISGNIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCEPVSPPLEMEIKLEVNGQNAGIILNPRQEGEIKREVKSEETGFVLKPKQEIVAKSAAQIVHEQHGNMAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFMLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETKFKFVQIDELGPFVNRNDLVDVIGVVQNVSSTMSIRRKSNNESISKRDITIADETKKTVVVSLWNELATNVGQELLDIADKSPIVAIKSLRVGEFQGVSLSTISKSLVLINPDLPESKKLRCWYESEGKDASMASVGSDSTPTSKNGMRSVYSDRVSLTQITSNKSLGEDKPAFFSIRAHISFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNVESSLRYIMVVKVSDASGEAYVSVFNEEAEAIVGCSANELDSLKSQEGEDNPYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITARAVAPVDFAAESKILLEEISKMRVS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1509 623 CDD RPA1_DBD_A 180 283 - -
Bisa02g1509 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bisa02g1509 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bisa02g1509 623 CDD RPA1_DBD_B 313 419 - -
Bisa02g1509 623 FunFam Replication protein A subunit 434 620 - -
Bisa02g1509 623 NCBIfam replication factor-a protein 1 (rpa1) 4 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bisa02g1509 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 583 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bisa02g1509 623 Pfam Replication factor-A protein 1, N-terminal domain 6 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bisa02g1509 623 SUPERFAMILY Nucleic acid-binding proteins 447 620 IPR012340 -
Bisa02g1509 623 Pfam Replication protein A OB domain 308 405 IPR031657 -
Bisa02g1509 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Bisa02g1509 623 Gene3D - 291 431 IPR012340 -
Bisa02g1509 623 Gene3D - 6 112 IPR012340 -
Bisa02g1509 623 Gene3D - 177 286 IPR012340 -
Bisa02g1509 623 FunFam Replication protein A subunit 177 286 - -
Bisa02g1509 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Bisa02g1509 623 Pfam Replication factor-A C terminal domain 468 613 IPR013955 -
Bisa02g1509 623 CDD RPA1_DBD_C 454 619 IPR047192 -
Bisa02g1509 623 FunFam Replication protein A subunit 4 114 - -
Bisa02g1509 623 FunFam Replication protein A subunit 290 429 - -
Bisa02g1509 623 Gene3D - 432 620 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1509 Bisa-ChrBisa02 26091959 26095139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1509 1 623 Core DNA Replication Machinery Family AT5G08020 68.160 0.0 897