Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1504 ATGCCAACGGGTATTCGCCGTATAATTTCAAGGATCGGAATTTCTCCCTTCTCTGGTTTTAGTGTTGTCTCCATACACTTTCAGAGACACAGCGAAGCAAGGGAACTAGAGAAGATTACAGCGATGGCTTTCCTTGGTAGAATTGGGAATATACTAAGACAGGCTGCAAATAAGCAGCTGGGCTCAGAATTATGTTCAACTCCATCTATTTTCCAGGCTATACGGTGCATGTCATCTACTGGAAGTTCCAAGCTGTTTATAGGAGGATTGTCATATTCTACTGATGAGCAAAGTATGAGGGAAGCTTTTGCCAAATATGGTGAAGTAGTAGATGCAAGGATAATAATGGATCGTGACACTGGTAGATCTAGAGGTTTTGGATTTGTAACTTTCACTTCAGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGATCTACATGGTCGCCGGGTTAGGGTCAATTATGCTAATGAAAGGACTCGTGGATTTGGAGGTGGCGGTTCTTATGGCAATGCTCCATATGGTGCTGGCGCTGGCTATGGTGGTGGTTATGGTAACTCTCCCTATAGTGGTTCTGGTGCGTATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGTGGATATGATGGAGGAAGCTATGGATCAGGTGGCAATTTTGGTGGCAGCACTGGCAATAACTATGCTTCTGGCAGTTTTGGAACTGGAACTGCAGGTGGCAGTTACAGTGGAAGTGGAACGAATTATGGGAATGATGGTAACTTTGGAAGTGGAGGCACTTATGCTGGTGGAAGTGGTGGAGGCTATGGCGGTAATAGCGGTGGAGCTGCTGCTGACAGTTTTGGATCTGGAAGTGCTGGTAGCAGCTTCGGTGGTAGTGGAATGAGTTATGGGACTGATGGGAACTTTGCAAGTGGAAGCACTTACCCTGGTGGAAGTGGTGGAGCCTATGGTGGTAATAGTGGAAGTGGAGCTGCTTCTGACAGCTTTGGAACTGGAAGTGCTGGTGGCAGTTTCGGTGGAAGTGGAACAAATTATGGTAATGTTGGGAACTTTGCAAGTGGAAGCAATTATGCTGGTGGCAACAATGAGAACTTTGGTGTTGCTGGTGGTGGTGGGGGTATTGATAATTACGGAAGTGCTCCTAGTTTTGGTGCTGCTGCTGGATTTGGCAGCAGTGATAACTTTGGCAGTTCTGCTGGTTTTGGTGGCAGTGGTGGCACAGGTTCTGGCAACAGCTTTGCCAGTGAAAGCGGAGGGCTGGACCTTGGCAGCAGTGGTCAATTGGATAGCAATGAAAGCGGCAATGCAGGTGAGGATGTTGGAGATTATGGGGAACCGAAAGAGGGAAACTACAGGGATGATGACGATGATGATACCAATAATTTTGCCAAAAGGGCCTGA 1410 0.4752 MPTGIRRIISRIGISPFSGFSVVSIHFQRHSEARELEKITAMAFLGRIGNILRQAANKQLGSELCSTPSIFQAIRCMSSTGSSKLFIGGLSYSTDEQSMREAFAKYGEVVDARIIMDRDTGRSRGFGFVTFTSVEEASSAIQALDGQDLHGRRVRVNYANERTRGFGGGGSYGNAPYGAGAGYGGGYGNSPYSGSGAYGGNAAGGYGGGGYDGGSYGSGGNFGGSTGNNYASGSFGTGTAGGSYSGSGTNYGNDGNFGSGGTYAGGSGGGYGGNSGGAAADSFGSGSAGSSFGGSGMSYGTDGNFASGSTYPGGSGGAYGGNSGSGAASDSFGTGSAGGSFGGSGTNYGNVGNFASGSNYAGGNNENFGVAGGGGGIDNYGSAPSFGAAAGFGSSDNFGSSAGFGGSGGTGSGNSFASESGGLDLGSSGQLDSNESGNAGEDVGDYGEPKEGNYRDDDDDDTNNFAKRA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1504 469 CDD RRM2_NsCP33_like 84 159 - -
Bisa02g1504 469 PRINTS Eggshell protein signature 223 233 - -
Bisa02g1504 469 PRINTS Eggshell protein signature 265 283 - -
Bisa02g1504 469 PRINTS Eggshell protein signature 197 212 - -
Bisa02g1504 469 PRINTS Eggshell protein signature 79 95 - -
Bisa02g1504 469 SMART rrm1_1 84 157 IPR000504 GO:0003723
Bisa02g1504 469 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 53 224 - -
Bisa02g1504 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Bisa02g1504 469 SUPERFAMILY RNA-binding domain, RBD 80 190 IPR035979 GO:0003676
Bisa02g1504 469 MobiDBLite consensus disorder prediction 400 469 - -
Bisa02g1504 469 MobiDBLite consensus disorder prediction 400 437 - -
Bisa02g1504 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Bisa02g1504 469 MobiDBLite consensus disorder prediction 444 469 - -
Bisa02g1504 469 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 72 276 - -
Bisa02g1504 469 Gene3D - 54 176 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1504 Bisa-ChrBisa02 25999689 26002513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1504 82 191 Eukaryotic Initiation Factors Gene Family AT4G34110 28.906 1.59e-07 52.0