Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1484 ATGGAAGAAGAAGATCGACCAGTGTTGAAGCATGTGTGTAAATTCTGCAGCAAGAGCTTTCCTTGCGGTAGATCTTTGGGAGGTCACATGAGGTCACACGTGACCAATATCCCAGCTGAAACAGAGGAGAAGCTCGCGACGACGTCGTCGAGGAAGCTTCAGTCCGGCAGCAATGGCGGAACTGGAAGCAGCAAGGTCGGAGAGTACGATCTCAGAGAAAATCCTAAAAAGACACGGAGATTCGCAGATTCAAGAAGCGAAGAAGAAGCTTCGCCATTAGTGACAGAGGACAAGTTCTGCAAGGAGTGCGGAAAGGCGTTTCACTCTTGGAAAGCTCTGTTCGGTCACATGAAATGCCATTCCGAGAAAGAGAGAGCTTCCATTGTTAACAACAACATAGAGGATCAAGATTCTTCGAGCCAGAAACTGGTCACGGATAGCCAATCGGACAACGAAGCCACTGCGAATCCGAATCGAAGAAGAAGATCGAAGAGAAGAACCAGGTACGTGACCGTTGCTTCGACCTCTTCTCTATCCTTCGCGAACCCTTCGTCTTCTGTCTCTGAGGCTGAACAAGAGCAAGAAGAGGTGGCTATGAGCTTGATGATGCTGAGTAGGGACGTTGGTCATTGGGGTGGTTTGAGTATGAATTTGAATTTGAATTCGACTTTGAACTTGAATTCGAATTCTCTGGCTGAATCCTCTGATAATAACTCTGCCTTCTTCGAAGCTCGATCTTCTGCGGTTCGAGCTAACCTGAACCTCAGCTCGAAAGGGAAGAAGCCAGAGATTTTTACCAGAACGATCAAAGCCAAAGTGTCCATTAATGGATTAGTTAAAGAAAAGAAGCACGAGCTTGAATTGCAGTCTGCATTGGAGGATTCAGAGGATGAACAGGGGAAGAACGAGGTCAATGGAACAGAGCTAGATTCATCAACGAAGAGAAGGTTCAAGTTCTGTGATTCTGAAACGAAGTCAAATTGTAAAAAGGCCAAGTTCAAGTGTACCACTTGCAACAAGATCTTCCATTCGTACCAAGCTTTAGGGGGACACAGAGCGAGCCACAAGAAGATGAAGGGATGCTCTGGGTCAAGAAACGAGAGCAGCGAGAACAGCATTGAGACAACGGACCTCAACAATGGTGGGCATGTGGTTGAAGAACAAGAAGAGGAAGAAGCAGAAGAAGCAGGAGTAGAAGAGCAGGAGCTTGGTGGTTCTGGTAATTTTGAGAATGAGACAATTACAGAACCCAAGAAGAAGAAGAACAACAAAGGGCATGAGTGTCCGATTTGCCTCAAGGTTTTCCCATCAGGGCAAGCCTTGGGGGGTCACAAGAGATCTCATCTGGCTGCAGGATCAGTGGTGATTCAGGAGCCACCAGTTCAGGAAATCAGAGACTTTCTTGATCTCAATCTTCCTGCTGCTACAGAAGAAGAAGGCAATTACACACCGTGGTGGGTCGTGGAAGGCAATCATCACAAGCAAGAGGCTCTGGTTGGCCTCATTTCTAACTAG 1515 0.47 MEEEDRPVLKHVCKFCSKSFPCGRSLGGHMRSHVTNIPAETEEKLATTSSRKLQSGSNGGTGSSKVGEYDLRENPKKTRRFADSRSEEEASPLVTEDKFCKECGKAFHSWKALFGHMKCHSEKERASIVNNNIEDQDSSSQKLVTDSQSDNEATANPNRRRRSKRRTRYVTVASTSSLSFANPSSSVSEAEQEQEEVAMSLMMLSRDVGHWGGLSMNLNLNSTLNLNSNSLAESSDNNSAFFEARSSAVRANLNLSSKGKKPEIFTRTIKAKVSINGLVKEKKHELELQSALEDSEDEQGKNEVNGTELDSSTKRRFKFCDSETKSNCKKAKFKCTTCNKIFHSYQALGGHRASHKKMKGCSGSRNESSENSIETTDLNNGGHVVEEQEEEEAEEAGVEEQELGGSGNFENETITEPKKKKNNKGHECPICLKVFPSGQALGGHKRSHLAAGSVVIQEPPVQEIRDFLDLNLPAATEEEGNYTPWWVVEGNHHKQEALVGLISN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1484 504 MobiDBLite consensus disorder prediction 354 424 - -
Bisa02g1484 504 Gene3D Classic Zinc Finger 8 120 - -
Bisa02g1484 504 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 69 88 - -
Bisa02g1484 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 360 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 41 64 - -
Bisa02g1484 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 426 453 IPR013087 -
Bisa02g1484 504 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 486 - -
Bisa02g1484 504 SMART c2h2final6 98 120 IPR013087 -
Bisa02g1484 504 SMART c2h2final6 426 448 IPR013087 -
Bisa02g1484 504 SMART c2h2final6 11 33 IPR013087 -
Bisa02g1484 504 SMART c2h2final6 333 355 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 132 168 - -
Bisa02g1484 504 Gene3D Classic Zinc Finger 330 448 - -
Bisa02g1484 504 ProSitePatterns Zinc finger C2H2 type domain signature. 428 448 IPR013087 -
Bisa02g1484 504 SUPERFAMILY beta-beta-alpha zinc fingers 10 38 IPR036236 -
Bisa02g1484 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 364 382 - -
Bisa02g1484 504 Pfam C2H2-type zinc finger 426 450 - -
Bisa02g1484 504 Pfam C2H2-type zinc finger 100 122 - -
Bisa02g1484 504 Pfam C2H2-type zinc finger 333 357 - -
Bisa02g1484 504 Pfam C2H2-type zinc finger 11 33 - -
Bisa02g1484 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 132 154 - -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 40 88 - -
Bisa02g1484 504 ProSitePatterns Zinc finger C2H2 type domain signature. 335 355 IPR013087 -
Bisa02g1484 504 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Bisa02g1484 504 MobiDBLite consensus disorder prediction 289 309 - -
Bisa02g1484 504 SUPERFAMILY beta-beta-alpha zinc fingers 99 355 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1484 Bisa-ChrBisa02 25358180 25359694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1484 420 478 C2H2 Transcription Factor Family AT1G26610 55.556 6.17e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g1484 zf-C2H2_6 3e-12 CL0361