Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1474 ATGGAGATCACAGAAGAACAGAGAAAACGAGCCGAGGCAAACCGTTTAGCGGCCATTGCAAGACGAAAGGCACTGTTAGAATCTAATACACAGAAGGACCCTTGGCAACTCTTCAAGTGTCGTAAGAGCTCTCTCGAAGTCAACCCCAAGACCAGACCCACTGACCTCCCCAACCAACCTCAATCCCCCCGCGAACCCGTTTCTACAAAACCCTTGCCTCATAAGTTCATCGTTAGGCTCGAGATATGCTCTCCCGACTCATTCTCCGCAACCCCATGTCCCCTTCGGGGTTTCCCCTATCCCGGGGAAGATTGTTGCTTCCAGAGGCTAAGCCACTCTTTGTCCGATGTCATGCCTTCACACTACACCCAGAATCACAGTGGCGGAAAGGCCTGTGTGTATAAAATAAGGGATTACAATGCTGTCCTTAGATGTTTGAAGATTGCCACCGACATAGAAGTTGAAGAAATTCCATGGGGAACTTTGAACGTCATTGAGAGGCTTTCACATTACTTTGCTGCAGGGCGCTGGATACCCTGCAGGCCAGAGCATTTGTCTGATGACAAAGTTGATGAGTTAATTGTGAAGCTGCCAGGAAAATTGTTGGGTGCATTATTGCCTTTCCAAAGGGATGGTTTAAGATTTGGTTTGAGAAGGGGTGGCCGGTGTCTTATTGCAGACGAAATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGCCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGTTGGCTTCCCTGTTTTTTGCCTGCTGATATCCATCTAGTTTTTGGCCATCGAGATAATCCTGCATATTTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTCCATCGTTTGAGGAAGAGTATGCTTCAGCAAGAATGGGCTCTTTTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAGACCTCAGAACCAGGGGAGATAAAGGCGGTTCTTGATGTGGCTTCAAAAGTCAAGCACATAGTACTGCTATCTGGGACACCTTCTTTGTCAAGGCCCGGACTGTTGGGGAAGAATAAGTATGAGTTTGCAAAAACTTATTGTGATTTTAAATATATCAAGGGAATCCAAGGCAAATATTTTGCGGATTTTTCAAAGGGCGTTCGCCTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTTTGAAGGAGCATGTGCTGCTGCAATTACCACCAAAACGGCGGCAAATTATAAGGTTGTTGTTGAAAAGATCAGATGTAATTGCTGCAAAAACTGCAGTTGGAAAGTTGAATAGCAATACTTCCAAAAGTGCCACTGAAGACATGACTTTGGAAAGTTTAGATGAATCTGATGAGGCTTTGTTGGAGAGATCAGATGTAGATGCTGTACAAACTGCAGTTGTGGTGTTGAATAGCAATACTTCCAAAAGTACCGCTGAGGACATGACTTTGGAAAGTTTGGATGAACCTGATGGGAAGCTTTCCTACCAGGAACTTGGCATTGCAAAGCTTTCGGGATTTCGTGAATGGCTTTCCCTCCACCCAGTCATTGCAGAGTCAGAAAATGCTTCAAAAATGATAATTTTTGCTCATCACCATAAAGTTCTTGATGGAGTACAGGAGTTTGTATGTGAGAAAGGGATTGGTTATGTCCGAATTGATGGAAACACACTTGCCAGGGATAGGCAGTCAGCAGTGGTGTCCTTTCGATCAACACCGGAGGTTAAAATTGCAATAATAGGTATTTTGGCAGGAGGATTTGGACTTGATTTCTCAACAGCACAACATGTTGTGTTCTTGGAGCTTCCTCAGTGCCCAACTCTGATGCTTCAGGCTGAGGATAGAGCTCATCGGCGGGGGCAAACAAATGCAGTCAATGTATACATTTTCTGTGCAAAGGATACCTTGGATGAATCGCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCGTCTACGACGGATGGTAAATACGATGCTATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTAGACACATCTGTCAAAACTGATAGTAGCTATGAAGAGCAATCTGCATCAAATGAAAATTCTGAACAGGCGATGAAGTTACCGGATTTTGTATCAGTTTCCAATTTGCCAACTTCCCAAGCTGACTCTGAGGAATCAGAAGCAAAATTGGGTGACCAATCTGATCAGCGGACATACTTTGTAAATAATTTAGTTCTGACAGCTTCAAGACTTGATGTTTACATTGTGGATAAGGTTTCCTGCCTAGAATCTGGTGAGGATTCTATTTTAGATGGAAATCTAGATGAAGATTTTTTTGATGCTGAGGAACGATGCTCTGATTTTGATACTAATAAGCTGGATAAGAGTGATGGAAACAAAGATCATATGATAGATTTTATCCAAAAGAACAAGAGCAAAGAAAATAATGAAGTAGAAGAGGATAAAAAATCATCCCAAACAATAAAAGCAGATGTCTACCAACCTGTTCAGCCAATTGAAGTTGATGAAAATTCCACTAGTCAAGTTGGATCCCTACGATTTGAGGTGAGCCCACACACTGGAAGGGTCCACTTGTATTCTTGCATTTTGGGTACAGATACAAGACCAAGACCACTTTTTGAAAATTTTCGACCTGAGGAACTTGAGTTGCTAAGTTCCCTTGCTGATTATGATAAGAAAAAGGAGATTTCGATCAAGGACAATCCTGCTTATACACATGCTCTTTTGGAATTTTCAAATGAATGGAAGAAATTAAGGCCAATTGAGCGTAAAAAGTTACTGGGAAAACCATTACAACTTCCCTTGACTGTTGAGTTGTGCTACTTGAGTGAAAGCAATAGCCACAACAATAAGGGACTATTAAATGGTGGAAGTAAACGACGCAAGACACCATTAATGGAGATTAGCCATCCTTTACCATCAGATGCTGTTTGGAAAAAGGTTTATTTGCGAAGTGGTAGAGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTCTGACAGATGAACCTCTTTGTAAGCTTTGTCAAAAGACATGCATGGGTAACAATGCCAAGACACCTGATTATTTTGAAGATCTTTTCTGTAACCTTGTCTGCTATGAGGAGTATCGCATGAGAACCAGCAACAAATTCCTTCGTCAGGCAAGAACTTTGACCATAAAAGAACTTTTTGAAATTGAACATGGTGTGTGTTCAGATTGCCATTTAGACTGTCATAAACTAGTTGAGCATATAAGACCTTTGTCATTGGCAAGGCGACGAGAGTATATTGAGAAAGTGGCACCAAAAGTGGCTAAGAGAAAGAGCATGCTTGAGAAGCTAGTCAATGATCCAACTGAAGGCAATGCATGGCATGCAGATCATATTGTTCCAGTATATCAAGGCGGAGGCGAATGTAGGCTGGAGAATATGAGGACCCTCTGTGTGGCCTGCCATTATGATGTTACTACAGCACAGTGTGCTGAACGACGCAAAGAGAGAGCCAATGCCAAGAAACAGCTGAAATTAGTAATGAGTGAGTTAAAAACTGGTCAAACGAAGGATGCCACAGGCTCTAATAGTAAGGACGATGAGTTTCTCGAGGTACAAGGGGATGGAATTGAGGATGAGCTTATAGTCAAGGTGCCTGGAAGTGCTTATTCCGTTGCTAATGTGTAA 3726 0.4216 MEITEEQRKRAEANRLAAIARRKALLESNTQKDPWQLFKCRKSSLEVNPKTRPTDLPNQPQSPREPVSTKPLPHKFIVRLEICSPDSFSATPCPLRGFPYPGEDCCFQRLSHSLSDVMPSHYTQNHSGGKACVYKIRDYNAVLRCLKIATDIEVEEIPWGTLNVIERLSHYFAAGRWIPCRPEHLSDDKVDELIVKLPGKLLGALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPCFLPADIHLVFGHRDNPAYLTRCPKVVVISYTMLHRLRKSMLQQEWALLIVDESHHVRCTKKTSEPGEIKAVLDVASKVKHIVLLSGTPSLSRPGLLGKNKYEFAKTYCDFKYIKGIQGKYFADFSKGVRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVIAAKTAVGKLNSNTSKSATEDMTLESLDESDEALLERSDVDAVQTAVVVLNSNTSKSTAEDMTLESLDEPDGKLSYQELGIAKLSGFREWLSLHPVIAESENASKMIIFAHHHKVLDGVQEFVCEKGIGYVRIDGNTLARDRQSAVVSFRSTPEVKIAIIGILAGGFGLDFSTAQHVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTSVKTDSSYEEQSASNENSEQAMKLPDFVSVSNLPTSQADSEESEAKLGDQSDQRTYFVNNLVLTASRLDVYIVDKVSCLESGEDSILDGNLDEDFFDAEERCSDFDTNKLDKSDGNKDHMIDFIQKNKSKENNEVEEDKKSSQTIKADVYQPVQPIEVDENSTSQVGSLRFEVSPHTGRVHLYSCILGTDTRPRPLFENFRPEELELLSSLADYDKKKEISIKDNPAYTHALLEFSNEWKKLRPIERKKLLGKPLQLPLTVELCYLSESNSHNNKGLLNGGSKRRKTPLMEISHPLPSDAVWKKVYLRSGRGKKEKEYTQGWTLTDEPLCKLCQKTCMGNNAKTPDYFEDLFCNLVCYEEYRMRTSNKFLRQARTLTIKELFEIEHGVCSDCHLDCHKLVEHIRPLSLARRREYIEKVAPKVAKRKSMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERANAKKQLKLVMSELKTGQTKDATGSNSKDDEFLEVQGDGIEDELIVKVPGSAYSVANV 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1474 1241 CDD SF2_C_SNF 525 654 - -
Bisa02g1474 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 417 IPR027417 -
Bisa02g1474 1241 MobiDBLite consensus disorder prediction 729 748 - -
Bisa02g1474 1241 SMART ultradead3 201 385 IPR014001 -
Bisa02g1474 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 378 IPR014001 -
Bisa02g1474 1241 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1189 - -
Bisa02g1474 1241 Pfam HNH endonuclease 1138 1169 IPR002711 GO:0003676|GO:0004519|GO:0008270
Bisa02g1474 1241 Gene3D - 1052 1197 - -
Bisa02g1474 1241 CDD HNHc 1132 1172 IPR003615 -
Bisa02g1474 1241 Gene3D - 181 369 IPR038718 -
Bisa02g1474 1241 SMART helicmild6 560 643 IPR001650 -
Bisa02g1474 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 694 IPR027417 -
Bisa02g1474 1241 MobiDBLite consensus disorder prediction 47 65 - -
Bisa02g1474 1241 MobiDBLite consensus disorder prediction 44 70 - -
Bisa02g1474 1241 Pfam SNF2-related domain 223 460 IPR000330 GO:0005524|GO:0140658
Bisa02g1474 1241 Coils Coil 1 23 - -
Bisa02g1474 1241 Gene3D - 421 730 IPR027417 -
Bisa02g1474 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 689 IPR001650 -
Bisa02g1474 1241 Pfam Helicase conserved C-terminal domain 541 643 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1474 Bisa-ChrBisa02 25225519 25240997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1474 548 696 RAD5 or RAD16-like Gene Family AT1G11100 35.099 1.35e-16 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa02g1474 SNF2_N 2.4e-20 CL0023