Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1472 ATGAGTCAGTGTTGTGTGCCAAACTGTAATCTCAAACAACAACAAAGACAGGAACAAGTCGAACAGGAAGACAACCTCAAATCCTCCTCTCACGTGCACAATCCCCTCATCATGTCTAATTATGAAGTTGCAGAGCTAACATGGGAAAATGGCCAGCTAGCCATGCATGGGCTTGGTGGGCTCCTTCCCACGGCCCAGACAAAGCCCACATGGAGTAGTAGGGCCCATGATACGCTAGAGTCCATTGTCCAACAAGCTACATGCCAACATCAAAAGTCAAATCTCATCATGCCACCACCACACCATACCCCAACCACTACCAGCACCGCCGCTGCAGCCTCCGACGGGATGACGCTGCCCAAGAAATCCGGCAAAGCACAAATGGCGGTGCCGATGCTGACGAGGAAGCGGACGTGGTCGGAGTCTGGCTACTGTGGCGGGAGTTTCAGCAGTAAGACTAAAGTTTTGGAAGAATGTGACCCCACCAGTAGTGGTTGTGCTAGTGCTAGTGCTACGTTTTGTAGAGACAACGAGAGTACCATGATGAGTTTAGCTTCTTATGAAACTGGTCGGAGCTTGAAAAGTAATAAGATTCTCGACCAGGATTCTCCTTCTCAGAATGGATCGGAGAATCAGGAGCAAGAAGAAGATAGAGACACCAAGGTAGAAATAAGCCGTTCCAACCCAGCAAGACGTAATCGAGCTGCTGCTATCCATAACCAGAGCGAGCGCAGACGAAGGGATAGGATTAACCAGAAAATGAAAGCTTTACAGAGGTTGGTGCCTAATGCGAGTAAGACAGATAAGGCTTCAATGTTAGACGAGGTGATAGAGTACCTAAAACAACTCCAAGCACAGATACAAATGATGAGTACCAGAAACATACCCCATCAACAACAGATGATGATGATGATGATGCCTCCTCCTTTAGCTATGCAACAACAACAACAGCAGCAGCTTCAGATGTCTATGCTGGCTCGAATGGGTGTTGGGCTGGGCTTGGGCTTCGGTATGGGCCTGCCTAACATGAACAACACCTCCATGGCTGTTGCAAGCACAGGTGGTCCTCCTTCTCTCCCACAGCTCACAGTTGGAGCTCCTGCCATTGCTCCCACCTTTGTGATGCCTTCATTGATTCAAGCCCATGCTCATGCTCCTCTAAAGCCTGAGCCTACTGCATCTGTAGCCCCCACAAATGCCTCAGTTTCTTTGCCTGATCCGTATACCACTGTGCTGTCCCAATCAGTTAATATGGATATCATGAACAGCATGGCTGCACTGTACCGACAACAGATCAGACAGAAGAATCAGGCCTTGAGCAGCCTGTCTGAACAACATCATGGACAAGGTGTCTGA 1356 0.4897 MSQCCVPNCNLKQQQRQEQVEQEDNLKSSSHVHNPLIMSNYEVAELTWENGQLAMHGLGGLLPTAQTKPTWSSRAHDTLESIVQQATCQHQKSNLIMPPPHHTPTTTSTAAAASDGMTLPKKSGKAQMAVPMLTRKRTWSESGYCGGSFSSKTKVLEECDPTSSGCASASATFCRDNESTMMSLASYETGRSLKSNKILDQDSPSQNGSENQEQEEDRDTKVEISRSNPARRNRAAAIHNQSERRRRDRINQKMKALQRLVPNASKTDKASMLDEVIEYLKQLQAQIQMMSTRNIPHQQQMMMMMMPPPLAMQQQQQQQLQMSMLARMGVGLGLGFGMGLPNMNNTSMAVASTGGPPSLPQLTVGAPAIAPTFVMPSLIQAHAHAPLKPEPTASVAPTNASVSLPDPYTTVLSQSVNMDIMNSMAALYRQQIRQKNQALSSLSEQHHGQGV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1472 451 SMART finulus 240 289 IPR011598 GO:0046983
Bisa02g1472 451 FunFam Basic helix-loop-helix transcription factor 229 292 - -
Bisa02g1472 451 Gene3D - 230 295 IPR036638 GO:0046983
Bisa02g1472 451 MobiDBLite consensus disorder prediction 103 128 - -
Bisa02g1472 451 MobiDBLite consensus disorder prediction 211 228 - -
Bisa02g1472 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 304 IPR036638 GO:0046983
Bisa02g1472 451 MobiDBLite consensus disorder prediction 193 210 - -
Bisa02g1472 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Bisa02g1472 451 MobiDBLite consensus disorder prediction 193 249 - -
Bisa02g1472 451 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 43 438 IPR031066 -
Bisa02g1472 451 Coils Coil 425 445 - -
Bisa02g1472 451 Coils Coil 240 260 - -
Bisa02g1472 451 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983
Bisa02g1472 451 CDD bHLH_AtPIF_like 234 294 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1472 Bisa-ChrBisa02 25184816 25188665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1472 1 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.934 5.28e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa02g1472 HLH 9.7e-14 No_clan