Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1455 ATGGCCGGGGATTCGGCTACTTCTCCGCATGTGCTCACCATGGACGCTCTTCGCGATGTCCAGAACTACGTTTGGGCAAATGAACAAGAAAGTTTGGCATGGGATACATACCATCATGTTTTTGAACTTGTGCATAATGGCAACTTGTCATTTCGAGAGAACCGGATGGAAGAGGCAATCAGCTTTTACTCAAGAGCAAATAGCATCAAATCTGCTGATCCTGTTATCCTTAGCAACCGTTGTGCAGCTTATCTTAGGATTAGTTTATTTTTAAAACACAGATCTCCATCGGCTTCAGAATATAAACCATTGAGTGGACTTGATCCTACAATACATGCTGAACTTGGCTTGAAGGATGCTGAGAAGCTTGTTGACCTCCAAAGTAATTCAGTAAAATCATACCTTTTAATGGCTAATGCACTTTTTCTGTTAGAGAAATATGAAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGTGATTATTCATTTCTTCTGGTACCATGTAGTGATTCTCTGCAGGCTTCACTTAAAAATTTGGAAAGAGCATCAGCTAGTTTGGTGGGGATGAGGACTCATGGAAAACCAGAGCGTACTGATGATTTTGATTGCACTGTTTGCCTGAAGTTGCTGTATGAACCTGTTACAACTCCTTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAATCATTGGATCGTGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATTAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCGGAGGAATATAATGAAAGGAAGCAAGAGCAAGACAGTTTGACCAACTTTGGCATAGATTTAATTCCTCTTTTTGTCATGGATGTTATTATTCCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTTATGGTCAGAAGAATAATGGAGGGGAATCATCGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACTGAGTGCGAGCCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCCGATCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACAAGATATTATGCCTCCTGAAGGGAGTAGAGAGAGACGGGATTTAGAAGAATTGACATACAATGCAGCAGAAATTGCTGGATCATGGATAAAAAGAGTCAAAGAAGTATCCAGAGCAAGACAGGATCAAAGAAGGCTCGAGAGAATCCAGTCTGTTGAAGTGATGATGCCCAGTCTCACAGATCCAGAGAGCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGCGAAGGCCTTCAGAAAGATTGGATCTTCTACGCTTAAGAGATACCGAAGAGAGGATCAGACGTGGACTGAGATATCTAGGAGCAGAGGAACAACGTTGTAGAATTCAGTGA 1503 0.4152 MAGDSATSPHVLTMDALRDVQNYVWANEQESLAWDTYHHVFELVHNGNLSFRENRMEEAISFYSRANSIKSADPVILSNRCAAYLRISLFLKHRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLQSNSVKSYLLMANALFLLEKYEKARDVILSGLQVDPFSDYSFLLVPCSDSLQASLKNLERASASLVGMRTHGKPERTDDFDCTVCLKLLYEPVTTPCGHSFCRSCLFQSLDRGNRCPLCRTVLFISPRTCSISVTLKSIIQKNFPEEYNERKQEQDSLTNFGIDLIPLFVMDVIIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGSRERRDLEELTYNAAEIAGSWIKRVKEVSRARQDQRRLERIQSVEVMMPSLTDPESFSFWLASLSKRRPSERLDLLRLRDTEERIRRGLRYLGAEEQRCRIQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1455 500 PANTHER RING FINGER PROTEIN 127 31 490 - -
Bisa02g1455 500 CDD RING-HC_LONFs_rpt2 205 249 - -
Bisa02g1455 500 SMART tpr_5 40 73 IPR019734 GO:0005515
Bisa02g1455 500 SMART tpr_5 131 164 IPR019734 GO:0005515
Bisa02g1455 500 ProSiteProfiles Zinc finger RING-type profile. 208 246 IPR001841 -
Bisa02g1455 500 SUPERFAMILY RING/U-box 201 271 - -
Bisa02g1455 500 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Bisa02g1455 500 Gene3D - 290 392 IPR046336 -
Bisa02g1455 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 287 IPR013083 -
Bisa02g1455 500 SUPERFAMILY PUA domain-like 292 490 IPR015947 -
Bisa02g1455 500 ProSiteProfiles Lon N-terminal domain profile. 289 492 IPR003111 -
Bisa02g1455 500 Gene3D - 424 492 - -
Bisa02g1455 500 SUPERFAMILY TPR-like 40 164 IPR011990 GO:0005515
Bisa02g1455 500 Pfam ATP-dependent protease La (LON) substrate-binding domain 292 490 IPR003111 -
Bisa02g1455 500 SMART ring_2 208 245 IPR001841 -
Bisa02g1455 500 SMART lon_5 291 492 IPR003111 -
Bisa02g1455 500 Gene3D Tetratricopeptide repeat domain 39 197 IPR011990 GO:0005515
Bisa02g1455 500 Pfam Zinc finger, C3HC4 type (RING finger) 208 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1455 Bisa-ChrBisa02 24982167 24990285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1455 196 249 C3H Transcription Factor Family AT1G74990 36.842 7.44e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g1455 02 24982167 24990285 Bisa02g1455 02 24982167 24990285 ECH