Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1438 ATGTCTGGCAATTTCGATTTTCCTGTTGTTTTGATCTGCATTGTAATTTCATATCTGTGGTTTTATGTTTTCCCTTCGTTTGCAAGCTTGAAATTGATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAACCGACAAGTGACTTATTCGAAGCGAAAAAGTGGGATAATAAAGAAAGCCAAGGAATTATCAATATTATGTGATATAGACATTGTCCTTCTTATGTTTTCTCCAACTGGAAAGCCCACATTACTACAAGGAGAGCGCAGCAATGTTGAGGAGGTCATTGAAAAGTTTGCTCAACTAAGCCCACAAGAGAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCTATTGGAACAATCTCGAGAAGATCAATAATGCAGAACATCTTAGGCAAATGGAAGACTCACTAAGGGAATCAATCAATCGAGTGCGACTACAGAAGGAAAATTTGGGAAAACAACAACTAATGTCACTTGAATGCACTAACCAGGAAGGGATAACTTTACCTCTGATGATGGCTGGTCTGCAAGAAGCCCAACCCCTAACTTGGCTTTTGAACAATGATAATAATCAGTTGATTTTACCTAGTGAACCAAAATTTCTGCCATTTAGTGATAATCCCAATAGAGATGCTGAGTGCTCCACTAGCGTTTCACTACCAGGCTATTCTGGATACATTAACAACGTCAAACTTGAGGTTGGCAACTCCCCTCAAGTTGCTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTCAATGAAACTGCTTGCTTAAATGCACAGCGTTGTGAGCAGTTTGCATACCCTCCTCCACCGGACAATGAGGAAGTGAAGCATCATCCAGCTTTGAACAGTAAACCAAACCCCGTGGATTATCAAGTTAATAGCAGCTTTGATCTGGCTAGATCACTGTTTGAAAATGGACATCATCAATTCTGGAATTCTGCTCCTGCACCTTGCAGCATTGCCATGTACAACGAGAATGGCTACCATCAGGTTACCAGTCCTCCGTCATTTGATTAG 1104 0.4049 MSGNFDFPVVLICIVISYLWFYVFPSFASLKLMGRVKLKIKKLESISNRQVTYSKRKSGIIKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNVEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSYWNNLEKINNAEHLRQMEDSLRESINRVRLQKENLGKQQLMSLECTNQEGITLPLMMAGLQEAQPLTWLLNNDNNQLILPSEPKFLPFSDNPNRDAECSTSVSLPGYSGYINNVKLEVGNSPQVATLGQGGGTLNEFNETACLNAQRCEQFAYPPPPDNEEVKHHPALNSKPNPVDYQVNSSFDLARSLFENGHHQFWNSAPAPCSIAMYNENGYHQVTSPPSFD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1438 367 Coils Coil 109 129 - -
Bisa02g1438 367 ProSiteProfiles MADS-box domain profile. 33 85 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 Gene3D - 46 128 IPR036879 GO:0003677|GO:0046983
Bisa02g1438 367 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 FunFam Agamous-like MADS-box protein AGL30 46 128 - -
Bisa02g1438 367 CDD MADS_SRF_like 34 114 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa02g1438 367 PANTHER SERUM RESPONSE FACTOR HOMOLOG 35 209 - -
Bisa02g1438 367 Coils Coil 156 176 - -
Bisa02g1438 367 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 87 IPR002100 GO:0003677|GO:0046983
Bisa02g1438 367 SUPERFAMILY SRF-like 34 127 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1438 Bisa-ChrBisa02 24741357 24745368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1438 33 280 Type I MADS-box Gene Family AT2G03060 45.614 1.81e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa02g1438 SRF-TF 8.8e-20 No_clan