LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1403	ATGGAGTTTGCTTTGAAGAGATCTGGGGTCAAGGAAGAGAAGAGAAGTGAATCTGATAATCATGAAGCTCCTCATCGTAAAGATGACAAAGGGACTAATACTATCATCGAGGTGCCACCCACGAAAACAACCGAAAGTTCCATGGTGGAAACTGGACACACTGCATCCTCAACTAAAATGGAAGAGGTTGATGAGCTTGAATCAGCGAGAGCAGCAATGGGGGAGGTAAGAGAAGAAAACCAAAGGCTAAAGATGTGTTTGGAGCGAATAATGAAGGAATATCAGGCGCTGCAAATGCAATTTCACGTCATACTTGAACAAGAAACAAAAAAATCTGCTGATCATGATGATGATGATGATAACAATCAAGTGGTAACAGAGGAATCGGAGCTAGTGTCCCTAAGCCTAGGAAGAGTTGGAAGCACTCCAAAACCTGAAGAGAAAACCAAAGTGTCTAAAGGAAAAGAAGAAGAGTTCAAGGAGGAATTGAGTTTGGGACTTGAGTGCAAATTTGAGACATCGAAATCAGGAAGCACGACAGAGGCCTTGGGCAACCCAAGCCCCACCAAATCCAATAGCTCTGAAGCACCCAGGGAAGAAGCTGCAGAGAGTTGGCCGCCCAGTAAGGTGCTCAAGACTGTGAGAGAGAGAGACTCTGCAGATCAAGACGAAGTTTCCCAGCAAAATCCTGCTAAGAAGGCTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCTACGATGAATGATGGATGCCAATGGAGAAAATACGGACAAAAGATTTCAAAGGGAAATCCTTGTCCTAGAGCTTACTATCGTTGTACTGTTGCACCTAATTGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAGGACATGTCGATTCTGATCACCACCTACGAAGGAACCCACAACCACCCTCTTCCTCTCTCCGCGACTGCCATGGCTTCCACCACTTCTGCAGCAGCTTCCATGCTCCTCTCTGGTTCATCTTCAACCTCTCACCCTTCCACCTCAGCTTCTGATCACCATCTTCACGGCCTCAACTTCTACCTCTCCGATGGTCCCAAACCCAGGCAATTCTACCTCTCCAATCCTGCTCTATCACCTTCCCCTTCTCACCCCACAATCACTCTCGACCTCACCACCCCCAACCCATCGTCTTCCAACTTCAACAGATTCAGCATCAACCCTCCCAGATTCCCTCCTTCTTCCACAAGTCTCAGCTTCAATTCCAGTTCCTCCAATGGAAATGCTATCAGCTGGACCAACAATGGCTTACTCTGCTACAACAACTACAGTAATACTCAGTTACCGTACGGTAACAGTAACATCAACAGGAACATGAACATCCTTAGCAGCTTCAACCTCGGATCAACTCATTCACAGGGACACCAAAATTCTTCAGTGCTGCCAGATCCCATAGCTGCAGCCACCAAAGTGATCACAGCTGACCCAACTTTTCAGTCAGCTTTGGCTGCTGCGCTTACTTCCATTATGGGCAATGGAGGTAACAGCACGCAATTGGGTGTGACAGAGAATTTGAGTCAGAGAATCACGAAATGGGGTGATCTGTTTCCTGCAGGTTCAGCTTCTGCTGCTTCAACTTCCAAAGTTAATGGCTGTGCCTCCAGCTTATTGAATAAAACGACGTCGTCCGCCACTACACAGACGGGGATGGTTCTGCCGTCGTCTCTGCCATTTTCCAGCTCCAAGACCGCGTCTGCGTTATCTCCTGCTGATAATAATAACAGAGACAACTCTAGTTCGTGA	1770	0.4701	MEFALKRSGVKEEKRSESDNHEAPHRKDDKGTNTIIEVPPTKTTESSMVETGHTASSTKMEEVDELESARAAMGEVREENQRLKMCLERIMKEYQALQMQFHVILEQETKKSADHDDDDDNNQVVTEESELVSLSLGRVGSTPKPEEKTKVSKGKEEEFKEELSLGLECKFETSKSGSTTEALGNPSPTKSNSSEAPREEAAESWPPSKVLKTVRERDSADQDEVSQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPNCPVRKQVQRCSEDMSILITTYEGTHNHPLPLSATAMASTTSAAASMLLSGSSSTSHPSTSASDHHLHGLNFYLSDGPKPRQFYLSNPALSPSPSHPTITLDLTTPNPSSSNFNRFSINPPRFPPSSTSLSFNSSSSNGNAISWTNNGLLCYNNYSNTQLPYGNSNINRNMNILSSFNLGSTHSQGHQNSSVLPDPIAAATKVITADPTFQSALAAALTSIMGNGGNSTQLGVTENLSQRITKWGDLFPAGSASAASTSKVNGCASSLLNKTTSSATTQTGMVLPSSLPFSSSKTASALSPADNNNRDNSSS	589

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1403	589	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	35	506	IPR044810	GO:0003700
	Bisa02g1403	589	SMART	WRKY_cls	247	307	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	174	195	-	-
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	110	159	-	-
	Bisa02g1403	589	Coils	Coil	80	100	-	-
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	560	589	-	-
	Bisa02g1403	589	ProSiteProfiles	WRKY domain profile.	242	308	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	36	56	-	-
	Bisa02g1403	589	SUPERFAMILY	WRKY DNA-binding domain	240	308	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	1	68	-	-
	Bisa02g1403	589	Pfam	WRKY DNA -binding domain	248	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	1	33	-	-
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	174	234	-	-
	Bisa02g1403	589	Gene3D	WRKY domain	231	309	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa02g1403	589	MobiDBLite	consensus disorder prediction	143	159	-	-
	Bisa02g1403	589	FunFam	probable WRKY transcription factor 31	232	309	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1403	Bisa-ChrBisa02	24102941	24107626	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1403	73	571	WRKY Transcription Factor Family	AT5G15130	41.450	2.54e-90	286

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bisa02g1403		WRKY	4.1e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa08g1869	08	44911916	44915816	Bisa02g1403	02	24102941	24107626	ECH
	Bisa02g1403	02	24102941	24107626	Bisa02g1403	02	24102941	24107626	ECH