Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1377 ATGGACGGCGGCGAAACTGACCTATGTGCTCCGGATAAGGAAGAGAACGATGAGGATGACGGGCAAGGGAAAGATTGTCTCTCCCGAGTTCGACTTGTCGATGCTCCCATTCTCTTGTTTGTTTGCTTCCACGAGGCTCTGCGAGGGGAACTCGACAAGCTTCGGCGCTTGGCGGAAACGTTGTTTTTGGAGAATGTGACACGCAGCCGGGAGCTGATTCTTAAGCTTCAACGAAGATTCGAGTTTCTCAAGCTTGTTCTTAAGTATCATTGCGTTGCGGAAGACGAGGTTATCTTCCCTGCATTGGATGTACATGTAAAAAATGTGGTATGTACATATTCCCTTGAACATAATAGCACCGTTGGGCTCTTCAATTCTATCTTTCACTATTTGGATGTGTTGTTGGATCCAAATGAGAATAATTCCAAGCTGTTCGAAGAACTTATAAACTTTATTGGAATCTTGCAAACTGCCAAGTCCCAGCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTCTTGATGCAGAAATTTTCTACCAAAGAACAGGCTTTGCTTGTTTGGCAATTCATATGTAGTGTTCCTGTAATGTTGCTGCAGGAACTCTTGCCATGGATGGTATCCTTCCTTTCTGCAGACAAACAAGCAGAAGTTAGGCAGTGCTTAAACGAAATTGCTCCAATGGAAAAAGAATTGCAACAGGTTTTGATTTCTTGGCTTGGTAGCAACACCCAAACCTTCACCCAAGTTTGCTTTTTGAGTGGAGAAGTTCAATGTACTGATGGTTCCCTTCATATGGAAAGATCACTTGGGTTGAGTTCTTGCAATAGAAATTTCAAAGCAATTTCAAATAAAATGAAAGAAAATTGCCTAGATATAGAAGATAGAGCCAAACAGGTTAATGTTCTTCATTTTTGGCATGATGCCATCAAGAAAGATATAAAAGAAATTCTAGAAGAACTTTATCAAATTAGAAAGACAACCTGCTTTCAGAATTTGGATTCATTACTCATCCAACTGAAATTCTTTGCCGATGTCCTCCTCTTCTACTGCAATGCTCAGAAGAAATTCTTTCATCCAATTTTAAATGAACTTGCTTATGGCTGGCTGACCAAGTCTACCGAACAATTTCTCAGTGGAAGTCACATTGAAGATTTGCAGCGGTTGCTGCTCTATAATGCTGAAAGTGGCATGCCTTTGTGCAAATTCGTAGAGAAGCTTTGCAAGGAGCTTGAATTGTTTAGGACAGGAGTCTACAAACAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGTCATTCGAATGAATTGCAGAGATGGAATGCTAGACGTACTCATGAGCTTGAGCCTGCATATGATGCCACTTGGGTTGCTGAAGTGTGTGATAACTTGGTTTTCAGCTCACTTGTCTGAAAATGAATCCAGGTCCATTCTCAATTGCATAAAACAAGGAAATCCTTTTGCCCATGAATCTTTTGCATCACTATTACAAGAGTGGTTCCGTGTTGGTTATTCAGGTAAGACCTCGGTTGAAAAATTCCGGCAAGACTTGCGACATATTTTTAAAAGCAAAAGTTCTTTGCTAACTGAGCAAGTTAAGGAAGCTCCTAGGTTTCCTTTCTTAAATTATGAGAAGCCTCTTAAAGGATCCATTATCGCTGGCAAGGATTCCTTGTCTTATTCATCGTCTTCTGGATTCAACAATTTGACCAAGTATGAGACCCCATACTCTACAGGAATTAATATGCATATATTTTTCCCTGCCACAGTTATGAATTTAGATCACTGTCATAGATTTCAGGCTGCAAATAGTTCTTCTGATCCCTTTCTTGATGATCCTAAACCAATTGACCTAATATTTTTCTTTCACAAGGCCATCAAAAAAGATTTGGATTACCTTGTTCTTGGTTCAGCTCAGTTAGAAAAAAATGTTGAGTTGCTCGTGGATTTCAGCAAACGATTCCACCTAATAAGCTTTCTTCATCAAATACATAGCGAGACAGAGGATGAGATAGCCTTTCCAGCCTTGGAGGCAATGAGTAAAGTGAAAAACATTAGCCTTTCTTATACCATTGATCACAAACTTGAAGTCGAACACTTCAATAAAATATCATTCATCCTTGATAAGATGTCTGATCTACATCTTTCAGTTTCAAGTTTTGAAACAAATACATGGGAGCAGAGAATGCTAAAACATCATCAACTGTGTAGAAAGCTACAAGAAATGTGCAAATCAATTCATAAACTACTTTCTGACCATGTAGATCATGAAGAAATTGAAATTTGGCATTCAATTAGAGATTTCTTCTCCGATAAGGAGCAAATAAAAATCATAGGATGCATGCTTGGGAGAATTAGAGCAGAAATATTACAAGATATGATACCCTGGTTAATGGGGTCTTTAAAACTAGAAGAACAGCGTGTTTTGATGTTTTTATGGTCCACGGTTACTAAAAATACAATGTTTGATGAATGGTTAGCTGAGTGGTGGGAGGGGTGCAGTATAGCAAAGGAAACGGAGAGATCAAATGACCCTCCCCTGAAGGCTGTAGAGCCATTAGAAATCATATCTAAATATTTATCTGAAGAAGTTCTTGACAAACTACAAGAAGAATCGTCATCCAACAAAAGCATAATTTCTTCACAGAAGGATCAAATTGATGATAATAGTGAGCTGTCTCACAATTGCAACCTTGATGGCAAATCCAAGGTTCTTCATGCCAAACAAAATAGCCGTGAGTGTTCAGAATGCAAAGATCAATTGAGTGATGATAACAAACTAACATGGACTGAAGTTAAAGATATCACAAGTTCGACCAATGATAAAGGTCAGTCTTTTCAACTCTCTGAAAACTCTGAGTATCATGGCCGTCTTATGAAAATAAGTCAAGATGATCTGGAGATGGCCATAAGAAGGGTATCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATATATAATCCAGAGCTTGCTGATGAGCCGTTGGATTGTTAGACAACAGATCTCTTGTTCAGAAGTTACTTTCACAAGCGATAGGCAGGAATTTCCTGGGCAGTATCGATCTTTCAGAGATACTCTCAAACTAATCTATGGCTGCAAACACTACAAGAGAAACTGCAAGCTTTTTGCTGCCTGCTGCAACCAACTTTATACATGCATACATTGCCATAATGAGGTATCGGATCACTCAATTGACAGGAAATCTGTTACAAAGATGATGTGCATGAAGTGCTTGACAATTCAGCCAATCAGTGACACATGTTCAACAGTAGCTTGCAGTAACTTAGCCATGGCAAAATACTACTGCAGGATCTGTAGATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTATGCCGAGTTGGGAAGGGCTTAGGTGTAGACTACTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCCCTTACTGTACATATATGCAGAGAGAAATCTTTAGAGGATAACTGCCCAATTTGTCATGAATACATCTTTACATCCTGCTCTCCAGTAAAGGCCCTTCCATGCGGTCATGTGATGCACTCGACCTGTTTTCAGGAATATACCTATTTTGACTATACCTGCCCTATATGTTGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAAAAAATTCCAGACGAGCATTTGGGTCAAACTCAGCTGCAGGTCATACTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTTCACTGGCTTTACCACAAATGCCCTTCTTGTGGGTCCTACAACACCAGAGTTCTATGA 3813 0.3942 MDGGETDLCAPDKEENDEDDGQGKDCLSRVRLVDAPILLFVCFHEALRGELDKLRRLAETLFLENVTRSRELILKLQRRFEFLKLVLKYHCVAEDEVIFPALDVHVKNVVCTYSLEHNSTVGLFNSIFHYLDVLLDPNENNSKLFEELINFIGILQTAKSQHMLKEEEQVFPLLMQKFSTKEQALLVWQFICSVPVMLLQELLPWMVSFLSADKQAEVRQCLNEIAPMEKELQQVLISWLGSNTQTFTQVCFLSGEVQCTDGSLHMERSLGLSSCNRNFKAISNKMKENCLDIEDRAKQVNVLHFWHDAIKKDIKEILEELYQIRKTTCFQNLDSLLIQLKFFADVLLFYCNAQKKFFHPILNELAYGWLTKSTEQFLSGSHIEDLQRLLLYNAESGMPLCKFVEKLCKELELFRTGVYKQFAFQETEVFPVIRMNCRDGMLDVLMSLSLHMMPLGLLKCVITWFSAHLSENESRSILNCIKQGNPFAHESFASLLQEWFRVGYSGKTSVEKFRQDLRHIFKSKSSLLTEQVKEAPRFPFLNYEKPLKGSIIAGKDSLSYSSSSGFNNLTKYETPYSTGINMHIFFPATVMNLDHCHRFQAANSSSDPFLDDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEKNVELLVDFSKRFHLISFLHQIHSETEDEIAFPALEAMSKVKNISLSYTIDHKLEVEHFNKISFILDKMSDLHLSVSSFETNTWEQRMLKHHQLCRKLQEMCKSIHKLLSDHVDHEEIEIWHSIRDFFSDKEQIKIIGCMLGRIRAEILQDMIPWLMGSLKLEEQRVLMFLWSTVTKNTMFDEWLAEWWEGCSIAKETERSNDPPLKAVEPLEIISKYLSEEVLDKLQEESSSNKSIISSQKDQIDDNSELSHNCNLDGKSKVLHAKQNSRECSECKDQLSDDNKLTWTEVKDITSSTNDKGQSFQLSENSEYHGRLMKISQDDLEMAIRRVSRDSSLDLQKKSYIIQSLLMSRWIVRQQISCSEVTFTSDRQEFPGQYRSFRDTLKLIYGCKHYKRNCKLFAACCNQLYTCIHCHNEVSDHSIDRKSVTKMMCMKCLTIQPISDTCSTVACSNLAMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLTVHICREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFDYTCPICCKSLGDMQVYFRMLDALLAEEKIPDEHLGQTQLQVILCNDCEKKGAAPFHWLYHKCPSCGSYNTRVL 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1377 1270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 659 1270 - -
Bisa02g1377 1270 CDD Hr-like 617 762 - -
Bisa02g1377 1270 CDD Hr-like 43 172 - -
Bisa02g1377 1270 Pfam Zinc-ribbon 1209 1268 IPR039512 -
Bisa02g1377 1270 ProSiteProfiles Zinc finger CHY-type profile. 1026 1095 IPR008913 GO:0008270
Bisa02g1377 1270 SUPERFAMILY Zinc hairpin stack 1099 1153 IPR037275 -
Bisa02g1377 1270 Gene3D nmb1532 protein domain like 35 192 - -
Bisa02g1377 1270 Gene3D nmb1532 protein domain like 295 449 - -
Bisa02g1377 1270 Gene3D nmb1532 protein domain like 611 782 - -
Bisa02g1377 1270 Pfam CHY zinc finger 1033 1108 IPR008913 GO:0008270
Bisa02g1377 1270 SUPERFAMILY CHY zinc finger-like 1026 1089 IPR037274 GO:0008270
Bisa02g1377 1270 Coils Coil 44 64 - -
Bisa02g1377 1270 ProSiteProfiles Zinc finger RING-type profile. 1162 1203 IPR001841 -
Bisa02g1377 1270 SMART ring_2 1162 1203 IPR001841 -
Bisa02g1377 1270 SUPERFAMILY RING/U-box 1149 1208 - -
Bisa02g1377 1270 CDD RING-H2_Pirh2-like 1161 1203 - -
Bisa02g1377 1270 Pfam Hemerythrin HHE cation binding domain 44 174 IPR012312 -
Bisa02g1377 1270 ProSiteProfiles Zinc finger CTCHY-type profile. 1098 1161 IPR017921 -
Bisa02g1377 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1155 1205 IPR013083 -
Bisa02g1377 1270 MobiDBLite consensus disorder prediction 1 23 - -
Bisa02g1377 1270 Gene3D - 1235 1270 - -
Bisa02g1377 1270 FunFam Zinc finger protein-related isoform 1 1157 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1377 Bisa-ChrBisa02 23600024 23609643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1377 614 858 C2H2 Transcription Factor Family AT3G18290 39.768 1.09e-45 178