Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1342 ATGGGTGGCAATGGCAAGCACTGGTGGAGAATCTCTTTCCATCGTCCTTCCTCGAGCTCAAAGCTTGAACAGAAGCAGCCTCCCATGGAGTTCATATGCCCAATTTCAGGGTGTTTAATGTTCGACCCCGTCGTTGTCGCTTCCGGTCACACCTTCGAAATGGTTTCCGTTCGAGTCTGCAGAGATCTTGATTTCTCTCCTACGCTAGAAGACGGCTCCGTTCCCGATTTCTCCACTATCATTCCCAATTTGGCTATGAGAACCACAATCTCCAATTGGTGCCATAAATCGGGTCTGAAAAACCCTCACCCTCCGGATTATAGCTCCGTGGAGAGGCTTGTCCGTGCATCAATGGCGTCGCAGCAGGAAACAAAGGACTTCGATTTAGGGATTTCGGACAGTGAATTGCTTAATGCCGTGGGGGATAACCCGCCAGTGATTTTCTCTCACGCCGCGACGGAGTTGGGTCCTCGAGTCAACCACTTCAACTCCACTTCATCGGAGGAATCTGTAATCGTTGTCCCGAGTCCCGAGACTCCTTTGCCCCTCGCGACTCGCCCCACCTGTTTCTCTTCCTCGTCTTCTTCTATTGAAATTAACGAGAGTGACGTTCAGAACCAGAACCAGAACCAGAACCCTTCTGGACCGATTTCCGAAAACGAGGAGAAATTATTATCGAAGCTCTGGAGCAACGACGCGTCTGAGCAAGAAGAAGCGGTTATTTCGCTGAGGAACATCACAAGGACCAGAGAGGAGACCAGAATTTCTCTCTGCACGCCTTCGATGCTCTCATCGCTTCGATCGTTGATCCTCTCAAAGAATTCCGTCGTGCAGGAAAACGCCGTCGCTTCGCTGGTCAATTTCTCTCTGGACAAATCCAATAAGGTGAAAATCGTTAGGTCGGGGCTTACCCCTTTCCTCATTGACGTCCTGAAAGGGGGGTTCCCCGAGTCGCAAGAACATGCAGCTGGAGCACTATTCAGCTTGGCCTTAGACGACGATAACAAAATGGCCATCGGGGTCCTCGGCGCGTTGGAGCCACTCATGCACGCCCTGAAATCCGAGTCCGAACGGACGCGGCACGACTCGGCGCTCGCGTTGTACCACCTGACTCTGATTCAGAGCAACAGGGTGAAGCTGGTGAAGCTCGTGGTGGTGCCGACTCTGCTTTCGATGGCGAAATCGGGGGACTCGGTGAGCCGGGTTCTGCTGATTCTGTGTAACCTTGCGGCGTGCACGGAGGGGCGGACGGCGATGCTGGATGCGAATGCGGTGGAGTGCTTGGTGGAGGTGCTGAGGCGGAAGAAGGGGGTGGGGTCGGAGGCAACGCGGGAGAATTGTGTGGCGGCGTTGTACGGAATGAGCCATGGGAGCTTGAGGTTCAAAGGACTGGCGAAGGAGGCGAGGGCTGTGGAGGTGCTGCGGGAGGTTGAAGAGACCGGAACGGAGAGGGCGCGTGAGAAGGCGAAGAGGATGCTGCAGATGTTGAGGGCAGCGACAGGAGGAGAAGGAGATGAAAACGGCGTCGGATTTGATGGGCCGTTGGAATCGGGTGGGTTGGCCCGAACCCGATTCCGAGCTGGTGGTGGAAGTAATGGGAACGTTGCCAACTATACAACATTTTAA 1626 0.5437 MGGNGKHWWRISFHRPSSSSKLEQKQPPMEFICPISGCLMFDPVVVASGHTFEMVSVRVCRDLDFSPTLEDGSVPDFSTIIPNLAMRTTISNWCHKSGLKNPHPPDYSSVERLVRASMASQQETKDFDLGISDSELLNAVGDNPPVIFSHAATELGPRVNHFNSTSSEESVIVVPSPETPLPLATRPTCFSSSSSSIEINESDVQNQNQNQNPSGPISENEEKLLSKLWSNDASEQEEAVISLRNITRTREETRISLCTPSMLSSLRSLILSKNSVVQENAVASLVNFSLDKSNKVKIVRSGLTPFLIDVLKGGFPESQEHAAGALFSLALDDDNKMAIGVLGALEPLMHALKSESERTRHDSALALYHLTLIQSNRVKLVKLVVVPTLLSMAKSGDSVSRVLLILCNLAACTEGRTAMLDANAVECLVEVLRRKKGVGSEATRENCVAALYGMSHGSLRFKGLAKEARAVEVLREVEETGTERAREKAKRMLQMLRAATGGEGDENGVGFDGPLESGGLARTRFRAGGGSNGNVANYTTF 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1342 541 Pfam U-box domain 28 96 IPR003613 GO:0004842|GO:0016567
Bisa02g1342 541 SUPERFAMILY RING/U-box 16 103 - -
Bisa02g1342 541 Pfam Armadillo/beta-catenin-like repeat 332 371 IPR000225 GO:0005515
Bisa02g1342 541 SMART arm_5 291 331 IPR000225 GO:0005515
Bisa02g1342 541 SMART arm_5 332 372 IPR000225 GO:0005515
Bisa02g1342 541 SMART arm_5 412 456 IPR000225 GO:0005515
Bisa02g1342 541 PANTHER U BOX DOMAIN-CONTAINING 25 496 - -
Bisa02g1342 541 FunFam RING-type E3 ubiquitin transferase 219 496 - -
Bisa02g1342 541 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Bisa02g1342 541 Gene3D - 218 495 IPR011989 -
Bisa02g1342 541 SUPERFAMILY ARM repeat 222 496 IPR016024 -
Bisa02g1342 541 MobiDBLite consensus disorder prediction 192 219 - -
Bisa02g1342 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 100 IPR013083 -
Bisa02g1342 541 MobiDBLite consensus disorder prediction 192 221 - -
Bisa02g1342 541 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1342 Bisa-ChrBisa02 22895795 22897420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1342 1 541 U-box Gene Family AT5G65200 53.750 0.0 550
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g1342 02 22895795 22897420 Bisa02g1342 02 22895795 22897420 ECH