Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1237 ATGTTTAAACGTATCTCCCCTAGTCCTAATCCACTGCGAACATTGTTTTTGCTTCTATTTGAAGTTAAACACTGGCTTTCTCTTCGATTTTTAACTTCATGCGAGCGATGTGAGGTCCTCTTTTGTTCTGCCGCAGATTGCAAAATCCAAAATCACCATCCTCTTCCCCTATCTTCTCCTCCTCCTCCCCTATCCCCATTCTCATCTCTTCGAGCACTCTCACAGCCCCAGCAATCTTCAATGGCGATTTCTTCAGCAGCAGCCTCAGCTTCCTCCAAGCTCATCTCCCCGCACCCCTCTCCTTCCCCTTCTTCCTCCTCTCCCTCTTCTCTTTCTGTATACCCTCAAAAACTCACAACCCCTACCTCCCATCTCTCCTCTTCCTTCATTAACCCCTGCACAATCCTCCACCTCCCTCCCTCCTCCGTCGCCACTCGCCACCGTTCCTTCACAATCCGAGCTGCACGCGGCAAGTTCGAGCGCAAGAAGCCCCATGTGAATATTGGCACCATCGGCCATGTCGACCACGGCAAGACCACTCTCACTGCTGCTCTCACCATGGCTTTGGCGGCCATGGGAAACAGTGCCCCCAAGAAATACGACGAAATCGACGCCGCCCCAGAAGAGCGAGCTCGTGGAATCACCATTAACACCGCCACCGTCGAGTACGAAACTGAGAATCGCCATTACGCTCACGTCGACTGTCCTGGCCACGCCGATTATGTCAAGAACATGATTACCGGCGCCGCCCAGATGGACGGCGCGATACTTGTGGTTTCCGGCGCCGACGGACCAATGCCGCAGACTAAGGAGCATATCCTTTTGGCTAAGCAAGTCGGTGTTCCGAATATGGTCGTATTTCTGAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTGCAGCTTGTAGAATTGGAGGTTCGTGAGCTTCTCTCGTCTTACGAATTCCCCGGTGACGATGTACCCATTATTTCCGGTTCTGCCCTGTTAGCTCTGGAGGCATTGTTGGCGAATCCCGCCATTAAACGCGGTGAGAACCAATGGGTCGACAAAATTTACGAACTCATGGACTCCGTGGATAGCTACATCCCAATTCCCCAGCGTCAAACCGATCTCCCCTTCTTGCTTGCCATTGAAGACGTGTTCTCCATCACAGGTCGTGGAACTGTGGCCACCGGGCGTGTTGAAAGAGGCACAATTAAGGTCGGAGACACCGTGGACATTGTGGGTGTGAGGGAAACAAGGAGCACCACCGTGACAGGAGTAGAAATGTTTCAGAAAATTCTCGATGACGCCATGGCTGGGGATAACGTAGGGTTGCTGCTGAGAGGTATCCAGAAGATTGATATACAGAGAGGGATGGTTCTCGCCAAGCCAGGCACCATTACCCCACATACCAAGTTCGAAGCCATTGTGTATGTGCTGAAGAAGGAAGAAGGAGGGAGGCATTCACCGTTCTTTGCAGGTTACAGACCACAATTCTACATGAGGACCACTGATGTTACAGGGAAAGTGACCTCCATTATGAATGACAAGGATGAAGAGTCGAAGATGGTTATGCCTGGAGATCGTGTGAAGATGGTTGTGGAGCTTATAGTGCCTGTGGCTTGTGAGCAAGGAATGAGGTTTGCCATTAGGGAAGGAGGGAAGACTGTTGGAGCTGGTGTGATTCAGTCAATCATTGAGTGA 1689 0.5133 MFKRISPSPNPLRTLFLLLFEVKHWLSLRFLTSCERCEVLFCSAADCKIQNHHPLPLSSPPPPLSPFSSLRALSQPQQSSMAISSAAASASSKLISPHPSPSPSSSSPSSLSVYPQKLTTPTSHLSSSFINPCTILHLPPSSVATRHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALLANPAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1237 562 Gene3D Translation factors 501 561 - -
Bisa02g1237 562 FunFam Elongation factor Tu 369 497 - -
Bisa02g1237 562 FunFam Elongation factor Tu 154 366 - -
Bisa02g1237 562 SUPERFAMILY Translation proteins 368 464 IPR009000 -
Bisa02g1237 562 PRINTS GTP-binding elongation factor signature 167 180 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 PRINTS GTP-binding elongation factor signature 211 219 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 PRINTS GTP-binding elongation factor signature 231 241 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 PRINTS GTP-binding elongation factor signature 284 293 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 PRINTS GTP-binding elongation factor signature 247 258 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 PANTHER ELONGATION FACTOR TU-RELATED 151 561 - -
Bisa02g1237 562 CDD EFTU_II 374 460 IPR033720 -
Bisa02g1237 562 Pfam Elongation factor Tu C-terminal domain 461 560 IPR004160 -
Bisa02g1237 562 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 163 367 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 Gene3D - 155 366 IPR027417 -
Bisa02g1237 562 MobiDBLite consensus disorder prediction 92 117 - -
Bisa02g1237 562 NCBIfam small GTP-binding protein domain 166 298 IPR005225 GO:0005525
Bisa02g1237 562 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 204 219 IPR031157 -
Bisa02g1237 562 Pfam Elongation factor Tu GTP binding domain 163 364 IPR000795 GO:0003924|GO:0005525
Bisa02g1237 562 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 461 561 IPR009001 -
Bisa02g1237 562 CDD EF_Tu 164 366 IPR041709 -
Bisa02g1237 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 389 IPR027417 -
Bisa02g1237 562 NCBIfam elongation factor Tu 155 562 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bisa02g1237 562 Hamap Elongation factor Tu [tuf]. 154 562 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bisa02g1237 562 Gene3D Translation factors 369 497 - -
Bisa02g1237 562 Pfam Elongation factor Tu domain 2 388 456 IPR004161 GO:0005525
Bisa02g1237 562 CDD EFTU_III 463 557 - -
Bisa02g1237 562 FunFam Elongation factor Tu 501 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1237 Bisa-ChrBisa02 20746859 20749806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1237 161 560 Eukaryotic Initiation Factors Gene Family AT5G60390 29.663 1.06e-43 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g1237 02 20746859 20749806 Bisa02g1237 02 20746859 20749806 ECH