Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1194 ATGACCACCCCTTCCCTCCCTTCGCTCTTCTTTCTCTTCTCTCTTCTCACCATTACCCTCATTTCCTCCTCACCCCTTCAAGACCCTGAATTGGAAGTGCAAGAAGCAAACAGGAAAATCAATGCTTCTACAGCGAGGAGGAACTTGGGGTATCTCTCGTGTGGGAGTGGCAACCCCATTGATGATTGCTGGAGGTGTGACCCGGATTGGGAGAAGAATAGACAGAGGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCGGTCGGGGGCAAGGGTGGTCGGATTTACGAGGTAACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGTACTATCCGGCACGCCGTGATCCAGGAAGAGCCGCTGTGGATCACATTCGCCAGGGACATGGTGATCCAACTCAAAGAAGAGTTGATCATGAATTCATTCAAGACCATCGACGGTCGGGGCGCGAGCGTGCACATTGCGGGTGGTCCCTGCATTACGATCCAGTATGTTACCAACATTATAATCCACGGGATTCACATCCACGACTGCAAGCAGGGCGGGAACGCTATGGTGCGGGACTCCCCAGGGCACTACGGGTGGAGAACCGTATCGGACGGTGATGGCGTGTCCATCTTCGGAGGAAGCCACATATGGGTGGACCATTGTTCGTTGTCGAATTGCAACGACGGTCTGATCGATGCGATTCATGGGTCTACCGCAATTACAATCTCTAACAATTACATGACTCATCATGACAAGGTCATGTTATTGGGTCACAGCGACTCCTATACTCAAGACAAGAACATGCAGGTCACTATAGCCTTTAACCACTTCGGAGAAGGTCTCGTTCAGAGAATGCCAAGATGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCAAACCCAACCATTAATAGTCAGGGCAATAGATTTGTGGCACCCGATGACAGATTCAGCAAAGAGGTAACGAAGTATGAGGATGCACCGGAGAGTGAGTGGAAGAATTGGAATTGGAGGTCAGAAGGGGACTTGATGGTAAACGGTGCGTTTTTTACTGCTTCTGGTGCAGGAGCCTCGTCCAGCTATGCGAGGGCTTCGAGCTTGAGTGCGAGGCCATCTTCGCTTGTCGGTTCGATAACGACGGGTGCCGGAACACTTAACTGTAGGAAAGGCTCGCGTTGCTGA 1221 0.5168 MTTPSLPSLFFLFSLLTITLISSSPLQDPELEVQEANRKINASTARRNLGYLSCGSGNPIDDCWRCDPDWEKNRQRLADCAIGFGKNAVGGKGGRIYEVTDSGDDDPVNPKPGTIRHAVIQEEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGTLNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1194 406 FunFam Pectate lyase 57 399 - -
Bisa02g1194 406 SUPERFAMILY Pectin lyase-like 36 400 IPR011050 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Bisa02g1194 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Bisa02g1194 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Bisa02g1194 406 Pfam Pectate lyase 141 323 IPR002022 -
Bisa02g1194 406 SMART amb_all 132 329 IPR002022 -
Bisa02g1194 406 Gene3D - 57 399 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1194 Bisa-ChrBisa02 20099305 20100849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1194 8 406 Polysaccharide Lyase AT5G63180 80.299 0.0 669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g1194 02 20099305 20100849 Bisa02g1194 02 20099305 20100849 ECH
Bisa08g2674 08 61950063 61953063 Bisa02g1194 02 20099305 20100849 ECH