Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1190 ATGGGTTTGAAATGTGGAGGGAGAATGGATCTCTCTGAATCCGACTCAGCTGCTGTTTCGAACTCCATCAAAGGCCCAGAATTGGGCCTTCAGTCAGCTCCTTCTTTCCCTAGTTCCTGTCTTGATCCTGAAACGTCAAATCTCAATCACCGGGATGAGGCCGATGCACTTCAGGATGAGCTTCAGAACAAGCTGGATTTGAAGGATAAGGATGTAGGGGGCGAGACGGAGAAGAAAGAATCAGAGCTTGATGATGATAAAGAAGAGTGTATTAAAGCTGGCGCTGGAGAATCTGAGAAAGAAGAAGTGTTCGACAAAGACGAATGGGATTGGAATAATGGATATGAGGACAATAGTTGGATGGAGAATGTGAACGACGGTGAGAATGACAAATTTGGAATAGATGATGCAATTGTCGGTGATGAAGAGGAGAAGAAGGATGAGGAAAGCAGCGGTAGAACTCACCAGTACCCGGTGAGGCCCGAAGCCGAAGATTGTGCATTCTATCTCAAGACTGGAACTTGCAAATTTGGGTTTAATTGCAAGTTTAATCACCCTATTAGGAGAAAAAATCAGGCTGTTAAAGAGAAGGCAAGAGAAAGAGAAGAAGCAGCTGAAAGATCAGGGCAGACGGAGTGCAAGTATTTTCTAAAGTCAGGAGGTTGTAAGTTTGGAAAGGCTTGTAAATTTAACCACACAAGAGGAAGACCTTCAGCAGCCCCTATTTCAGAGCTTAACTTTCTTGGATTGCCTATTCGTCTGCGAGAGAAAGAGTGCCCCTACTACATGCGTAATGGCTCTTGTAAGTTTGGATCAAACTGCAAATTCAATCATCCTGATCCTACAGCTGTTGGAGGAAGTGATCCTCCTTCAGGATATGGTAACGGTGCGGCCATTTCATTACAAGGGGTATCACAGCCATCTATGCCCACTTGGTCCTCTCCAAGAACATTAAATGAAACTGCTCCTTTTGTGCCAATGATGCTTCCACCTAATCAAGGGGTTTCTCCCCAAAGTCCTGAATGGAATGGTTATCAGGCACCTGTCTACCTATCTGAGAGGAGTATGCATCCGCCATCTACATATGTGATGAATAACCCGGCAATTGAAACAAATGTTTATATGCATCATCAAAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTACTTCTTAAAAACTGGGCATTGCAAGTTCAAATCTAATTGTAAATTTCATCATCCAAAGAATCGTGTTGCAAGACCTCCATGCACCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGATCAGAGTGTCTGCTCGCATTATAGTCGCTATGGAATATGCAAATTTGGGCCATCTTGTAAGTTTGACCACCCAATAAACCCATTGCCGTCAACTATGGCTGGACTAGATGAGGAATCCTCCTACACAAAATCTGCTAGTATGGAAGTGGCAGACATGGCTGGAAGTGGAGATGCAAGTGATGCTGCAATTGAGCAGCCTTTATAA 1512 0.4431 MGLKCGGRMDLSESDSAAVSNSIKGPELGLQSAPSFPSSCLDPETSNLNHRDEADALQDELQNKLDLKDKDVGGETEKKESELDDDKEECIKAGAGESEKEEVFDKDEWDWNNGYEDNSWMENVNDGENDKFGIDDAIVGDEEEKKDEESSGRTHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPIRRKNQAVKEKAREREEAAERSGQTECKYFLKSGGCKFGKACKFNHTRGRPSAAPISELNFLGLPIRLREKECPYYMRNGSCKFGSNCKFNHPDPTAVGGSDPPSGYGNGAAISLQGVSQPSMPTWSSPRTLNETAPFVPMMLPPNQGVSPQSPEWNGYQAPVYLSERSMHPPSTYVMNNPAIETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGHCKFKSNCKFHHPKNRVARPPCTLSDKGLPLRPDQSVCSHYSRYGICKFGPSCKFDHPINPLPSTMAGLDEESSYTKSASMEVADMAGSGDASDAAIEQPL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1190 503 MobiDBLite consensus disorder prediction 46 112 - -
Bisa02g1190 503 SUPERFAMILY CCCH zinc finger 159 188 IPR036855 GO:0046872
Bisa02g1190 503 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Bisa02g1190 503 SUPERFAMILY CCCH zinc finger 394 418 IPR036855 GO:0046872
Bisa02g1190 503 SUPERFAMILY CCCH zinc finger 432 460 IPR036855 GO:0046872
Bisa02g1190 503 Coils Coil 187 207 - -
Bisa02g1190 503 ProSiteProfiles Zinc finger C3H1-type profile. 389 417 IPR000571 GO:0046872
Bisa02g1190 503 SUPERFAMILY CCCH zinc finger 211 235 IPR036855 GO:0046872
Bisa02g1190 503 MobiDBLite consensus disorder prediction 14 45 - -
Bisa02g1190 503 Gene3D - 433 485 - -
Bisa02g1190 503 Gene3D - 201 287 - -
Bisa02g1190 503 Gene3D - 370 430 - -
Bisa02g1190 503 SMART c3hfinal6 207 234 IPR000571 GO:0046872
Bisa02g1190 503 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Bisa02g1190 503 SMART c3hfinal6 253 280 IPR000571 GO:0046872
Bisa02g1190 503 SMART c3hfinal6 389 416 IPR000571 GO:0046872
Bisa02g1190 503 SMART c3hfinal6 434 461 IPR000571 GO:0046872
Bisa02g1190 503 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872
Bisa02g1190 503 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 416 IPR000571 GO:0046872
Bisa02g1190 503 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 186 IPR000571 GO:0046872
Bisa02g1190 503 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 436 460 IPR000571 GO:0046872
Bisa02g1190 503 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 279 IPR000571 GO:0046872
Bisa02g1190 503 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 232 IPR000571 GO:0046872
Bisa02g1190 503 Coils Coil 47 67 - -
Bisa02g1190 503 Gene3D - 124 198 - -
Bisa02g1190 503 ProSiteProfiles Zinc finger C3H1-type profile. 207 235 IPR000571 GO:0046872
Bisa02g1190 503 MobiDBLite consensus disorder prediction 1 112 - -
Bisa02g1190 503 ProSiteProfiles Zinc finger C3H1-type profile. 434 462 IPR000571 GO:0046872
Bisa02g1190 503 SUPERFAMILY CCCH zinc finger 252 280 IPR036855 GO:0046872
Bisa02g1190 503 PANTHER PROTEIN PHOSPHATASE RELATED 50 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1190 Bisa-ChrBisa02 19977660 19982946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1190 385 502 C2H2 Transcription Factor Family AT3G02830 40.336 7.44e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g1190 zf-CCCH 6e-09 CL0537