Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1164 ATGGATGTGTATGTAGCCTCCGCCAAGTTGCTTGAGGAGTGTCAAGACCTGTGCTTGTGCTTGTGCTTGTGTACTAAAGCTGTGTCACATAGAATGGCTACTTGTGGTTCTCTTTCATTGTGCCCGTACAGCTTGTATCAACGCTCGTACCCAAGAAGGCGTTCCATTTTGTACTCTGTTGGCTCTTCTGCAATCGTAGGTACTGATGGATCTAAAGTGCCTAGCAAAAGATCAAGAAGAGTTGAAGGGCCCAGAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCTGATGGGCCAACGCTCCGGGTTCTTCCTATTGGTGGGCTGGGTGAAATTGGAATGAATTGCATGCTTGTCGGGAATCATGATCGCTATATCCTTATTGATGCTGGTGTTATGTTTCCAGACTATGATGAGCTTGGAGTCCAGAAGATCATATCTGATACAACATTTATAAGAAAGTGGAGCCACAAAATCGAGGCAGTTGTTATAACACATGGTCATGACATGAAGATCATATCGGTCCGCTGCCTTGGAGTTGTGAATGTGGGCAGGTCTACATGCATCCCGCAAGCAGGTCTTGAAGAGGGAAAGGAGGTTATCCCAGCATTGGATTCACATACGCCAATATTTGCATCTTCCTTTACAATGGAGGGTGACCCATTCATGCCTGATTGTTGTGGTTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACAGGGGACTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGACCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTTTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTTCTAGAGGAAGGGTTATTACTACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGAAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACATATCTAGATGCAGCTTGGAAGGATGGACAGGCGCCGATTGATCCTTCCACTCTGGTGAAAGTGGAAGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTTACAACTGGCTCTCAAGCAGAACCACGTGCAGCATTGAATCTTGCATCTTATGGAAGTAGCAATTTTCTCAAACTGAACAAGGAAGATTTAATTTTGTCTTCAGCTAAGGTGATTCCTGGTAATGAGTCTCGAGTTTTGAAAATGCTGAACCGCATATCTGAGATTGGATCATCAATAGTTATGGGGACGAACGAAGGGCTGCACACGTCTGGTCATGGTTATAGAGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAGCCACAACATTTTCTTCCCATTCATGGAGAGCTCTTATTCCTGAAGGAGCATGAATTGCTTGGCAAATCATCTGGCATTCGACACATTGCGGTCATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGGAATAGAAGAATCCTTTCTAATGGTTTTATTTCCCTTGGAAAGAATTTACAGTTGAAGTATAGTGATGGGGACAAAGCATTCGGTACATCAAGCGAACTCCTTATTGATGAAAGATTGAAAATTGCATTAGATGGGATTATAATAGTCAGCATGAAAATATTTCGCCCTCAAAATTTAGATAGTTGTGTTCAAAACACCTTAAAAGGGGAGATAAGAATTACCACAAGATGCCTCTGGCTTGACAAAGGGAAGCTGTTGGATGCACTTCATAAAGCTGCTCGTGCTGCACTTTCAAGCTTCCCTATAAACTGTCCCCTTGCTCACATGGAAAGAACTGTGGCTGAGGTATTGAGAAAGATAGTGAAGAAACACAGTGGCAAGCGGCCTGAAGTTATTGTCAATGCCACAGAAAGTCCTGCAGCTGTTCACACTGGTGAGATAAGCACAAGGCTATCTGGCAAATCGCATGTGGCTAACAATAAATATGTTCAACAAAAGGAGCCTAAGTCCTCGCTGAAGAAAGATGGTTCTGATTCTTCTGAATACACTGAACAAGTCAAGTCTGTTAAGGTGTCAAGTTCTGAACCCAAAACTTCAAAGCCATTGAAGAGAAACAAATGGAAACCCGAGGAGGTCAAGAAGCTAATCATTTTACGTGGGAAGCTGCATGACAAATTTCAGATTGTGAAGGGAAGAATGGCACTCTGGAGACAGATATCTGAGAATATGTTGCCTGAAGGGGTCAACAGAAGTCCAGGGCAGTGTAGATATCTCTGGACATCTTTGGTACAGAAATACGAGGATATCAAGTCTCGGCAGAAAAGCGAGGTAAGTTGGCCACATCTTGAGGATATGGACAGGATTCTGTCTGATAACGAGGCCCTGGCAACAAAATGA 2436 0.4265 MDVYVASAKLLEECQDLCLCLCLCTKAVSHRMATCGSLSLCPYSLYQRSYPRRRSILYSVGSSAIVGTDGSKVPSKRSRRVEGPRRSMEDSVQRKMEQFYEGSDGPTLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIISDTTFIRKWSHKIEAVVITHGHDMKIISVRCLGVVNVGRSTCIPQAGLEEGKEVIPALDSHTPIFASSFTMEGDPFMPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASRGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGQAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSNFLKLNKEDLILSSAKVIPGNESRVLKMLNRISEIGSSIVMGTNEGLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSSGIRHIAVIKNGEMLGVSHLRNRRILSNGFISLGKNLQLKYSDGDKAFGTSSELLIDERLKIALDGIIIVSMKIFRPQNLDSCVQNTLKGEIRITTRCLWLDKGKLLDALHKAARAALSSFPINCPLAHMERTVAEVLRKIVKKHSGKRPEVIVNATESPAAVHTGEISTRLSGKSHVANNKYVQQKEPKSSLKKDGSDSSEYTEQVKSVKVSSSEPKTSKPLKRNKWKPEEVKKLIILRGKLHDKFQIVKGRMALWRQISENMLPEGVNRSPGQCRYLWTSLVQKYEDIKSRQKSEVSWPHLEDMDRILSDNEALATK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1164 811 Gene3D - 720 780 - -
Bisa02g1164 811 PANTHER RIBONUCLEASE J 230 676 - -
Bisa02g1164 811 SUPERFAMILY Metallo-hydrolase/oxidoreductase 108 507 IPR036866 -
Bisa02g1164 811 Gene3D - 91 190 IPR036866 -
Bisa02g1164 811 MobiDBLite consensus disorder prediction 695 709 - -
Bisa02g1164 811 CDD GT1 718 783 - -
Bisa02g1164 811 Gene3D - 294 452 IPR042173 -
Bisa02g1164 811 Pfam Myb/SANT-like DNA-binding domain 717 801 IPR044822 -
Bisa02g1164 811 MobiDBLite consensus disorder prediction 680 694 - -
Bisa02g1164 811 ProSiteProfiles Myb-like domain profile. 712 776 IPR001005 -
Bisa02g1164 811 MobiDBLite consensus disorder prediction 666 718 - -
Bisa02g1164 811 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 450 496 IPR011108 -
Bisa02g1164 811 SMART Lactamase_B_5a 120 302 IPR001279 -
Bisa02g1164 811 CDD RNaseJ_MBL-fold 111 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1164 Bisa-ChrBisa02 19427249 19443790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1164 714 791 Trihelix Transcription Factor Family AT3G25990 31.646 6.18e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Bisa02g1164 Myb_DNA-bind_4 1.4e-15 CL0123