Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1108 ATGAGTGCAAAGCCAGGCTTCCCAACGTCACAGACTAGTCTGTCTGGTGAGGGTACAGAAAAGCTACATGTTGGCAGAGGAGGCGTCGTTGATGTCTTGAAGGCTACCAAGGAATCCATGAATCATCACCCCAAATCATGGTCTGATGCGTATATGCGGCCAGAATCTACCTCCTATGGTTTAATTGGGAACAAGATTGTCACTGATGCTGCTTCTCATGAAAGTAGTCTATTCTCTAGCTCACTATCTGAGATATTTAGCCAAAAGATGAGGTTAACACGGAATGATGTTCTTTCTCAGCAACCTGTTACCATTGGATTCCTCCCTGAGGAAGAACCATATAAATCTCTTAAAGAAATTGAGGCTGACACTATTGGCAATCTCCTGCCTGATGAAGATGATCTGTTTTCTGGTGTAACTGATGAGTTAGGATACAATCCTCATGCCAAAACAAGTGATGACTTTGAAGAGTTTGATTTGTTTAGCAGTGGTGGAGGCTTGGAGCTGGAAGGAGATGAGCATCTAAGTTTGGGGAAAAGAATCAGTGGTATGGATGCAGATTCTGGTTATTTTGGAGGTTTTAAAGGAAAACTTCCTTTCGGTGAACAACCTTCTAGAACACTTTTTGTAAGAAATATCAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGGAACATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTACTTATTATGACCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGTCATTGAGGTCTAGAAAACTTGACATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATAAGCCATGGTACACTGGTGCTATCTGGTCTTGATTCTTCTGTTTCAAATGATGAGATTCAACAGATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCTAGAAGTGAATTACCGAAAATTTATTGAATTTTATGATGTGAGAGCTGCGGAAGCTGCTCTTCGTGCACTAAACAGGAGTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGGGCACATGTCTGACACAGCAGTCTCAAAAGGGACAAGATGATCCTGATTTTGGTCAAAGTCTCTGTGACAACTTATCTCTAAGACAGAAGGCAACAATGTCTTCTGGAGTAATTGCATCCGGCTGCTTAGAAAAAGGATCTAATCAGGGATTTCACTCTGCAATACAGCAGCCTATTAATGCATTTTCGCCTGTGAATTCTAACCTTACAGTGAGAGGGCCATCTTCTGTAAAAATTCCTGGTGTTAGCGAGTCTAGTAACTTTCTCGATGCAATGAAATTTGCCTCTGTTCCAAGATTCCATCCTCGTTCCTTCCCTGATTATCATGATAGTTTAGCTAATGGTAGTGCTTACAACTTTTCAAGCATGGTTGGCAATGTGGCTGGCAATATTGGTACTGGAATGACAGAAGGCTCAGATAGCATGCACATTCAGGGAAGGGCTTCAGCTGGGAATCTAATGGAATTTAATGGAGTAGGAAATGCGAGCTACCCAAATCATGGACTTTATCATGTGTGGAACAGCTCCAATTTGCATCAGGAACCTTCACCAAGCATGCTGTGGCAGAAAACATCATTTGTTAATGGTGCTTGTGCACCTTGCGTTCCTCAAATGCCCAGCTTTCCTAGAACACAGCCTCATATGCTGAGAGCATCACATATAGAGCACCATGTTGGGTCAGCACCAGTTGTCACAGCCTCTCCCTGGGACAGGCAACATTCTTATTTGGGAGTATCTCCTGAAGCTTCTGGTTTTTGCATGGGTTCTGTTGGAAGTGCAGGTTTACCTGGTAGCTGGCAGTTGCATACTCCGGATTTTCCCTCTCACAACATGTTTCCTCATATCAGTGGAAATGGCACGGAACTGACATCAAATGCTGGGCAGAGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACATCCCATGAACTCAATGTCTAAATTTGATTCCAATGAGCGAATGAGGAACCTGTATCCCCCCCGGAAAAGTGAAGCTAATACTAACAGTGCTGATAAAAAGCAATATGAACTTGACCTAGGCTGCATATTGCGTGGGGAAGACAGTCGAACTACTCTTATGATAAAAAATATTCCCAACAAGTACACGTCAAAGATGCTTCTGGCTGCTATAGATGAGCAATGTCGGGGGACTTATGATTTTCTTTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAAAAGTTTAACAGCGAAAAAGTAGCCTCACTTGCATATGCTAGAATTCAGGGGAAAGCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAGCGCTGCCGTCCTATTCTATTCCACACGGATGGCCCAAATGCTGGCGATCCGGAGCCCTTCCCCATGGGTACTAATATTAGACTGAGACCTGGAAAATCTCGCACTTGCAGTAATGAGGAGCATCGCAGCCAGGGGAGTGCTTCAACTTTGGCAAGTGGAGAGGGGTCTACTAATGGAATAGATTCCTCAATGACCTCTTCACATAACTCTGACTGA 2700 0.4267 MSAKPGFPTSQTSLSGEGTEKLHVGRGGVVDVLKATKESMNHHPKSWSDAYMRPESTSYGLIGNKIVTDAASHESSLFSSSLSEIFSQKMRLTRNDVLSQQPVTIGFLPEEEPYKSLKEIEADTIGNLLPDEDDLFSGVTDELGYNPHAKTSDDFEEFDLFSSGGGLELEGDEHLSLGKRISGMDADSGYFGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEEHGDIRTIYTACKHRGFVMITYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLVLSGLDSSVSNDEIQQIFGFYGEIKEIYESLEVNYRKFIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTCLTQQSQKGQDDPDFGQSLCDNLSLRQKATMSSGVIASGCLEKGSNQGFHSAIQQPINAFSPVNSNLTVRGPSSVKIPGVSESSNFLDAMKFASVPRFHPRSFPDYHDSLANGSAYNFSSMVGNVAGNIGTGMTEGSDSMHIQGRASAGNLMEFNGVGNASYPNHGLYHVWNSSNLHQEPSPSMLWQKTSFVNGACAPCVPQMPSFPRTQPHMLRASHIEHHVGSAPVVTASPWDRQHSYLGVSPEASGFCMGSVGSAGLPGSWQLHTPDFPSHNMFPHISGNGTELTSNAGQSSPKQLSHVFPGRHPMNSMSKFDSNERMRNLYPPRKSEANTNSADKKQYELDLGCILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKSRTCSNEEHRSQGSASTLASGEGSTNGIDSSMTSSHNSD 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1108 899 FunFam MEI2-like protein 5 isoform 2 195 289 - -
Bisa02g1108 899 FunFam Protein MEI2-like 1 290 383 - -
Bisa02g1108 899 CDD RRM1_MEI2_like 205 280 IPR034453 -
Bisa02g1108 899 Gene3D - 200 283 IPR012677 -
Bisa02g1108 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 272 IPR000504 GO:0003723
Bisa02g1108 899 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 358 IPR000504 GO:0003723
Bisa02g1108 899 MobiDBLite consensus disorder prediction 655 681 - -
Bisa02g1108 899 MobiDBLite consensus disorder prediction 1 21 - -
Bisa02g1108 899 Pfam RNA recognition motif 2 723 819 IPR007201 -
Bisa02g1108 899 Gene3D - 284 375 IPR012677 -
Bisa02g1108 899 MobiDBLite consensus disorder prediction 361 382 - -
Bisa02g1108 899 MobiDBLite consensus disorder prediction 868 899 - -
Bisa02g1108 899 SUPERFAMILY RNA-binding domain, RBD 725 810 IPR035979 GO:0003676
Bisa02g1108 899 MobiDBLite consensus disorder prediction 837 899 - -
Bisa02g1108 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 364 IPR000504 GO:0003723
Bisa02g1108 899 MobiDBLite consensus disorder prediction 1 18 - -
Bisa02g1108 899 MobiDBLite consensus disorder prediction 366 380 - -
Bisa02g1108 899 SUPERFAMILY RNA-binding domain, RBD 203 364 IPR035979 GO:0003676
Bisa02g1108 899 CDD RRM3_MEI2_like 726 811 IPR034454 -
Bisa02g1108 899 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 279 IPR000504 GO:0003723
Bisa02g1108 899 SMART rrm1_1 292 360 IPR000504 GO:0003723
Bisa02g1108 899 SMART rrm1_1 207 275 IPR000504 GO:0003723
Bisa02g1108 899 SMART rrm1_1 725 801 IPR000504 GO:0003723
Bisa02g1108 899 PANTHER RNA RECOGNITION MOTIF-CONTAINING 39 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1108 Bisa-ChrBisa02 18591362 18596817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1108 201 380 Eukaryotic Initiation Factors Gene Family AT3G16380 23.383 5.78e-08 54.7