Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0957 ATGAGTGGGAGTGGCAGAAAACGCTCTTCAAAGTGGGATTTAAGAGATGAGCCTGAGTTTGCACCTGATAGTAAGCAAATGCGATCTGGGTGGTCTTCTGCCAATCTTGCTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGGGAATGATAAGCTAAAACCTAATTCACGATTACCATCCAAGGAACCTTTTTCTGGAGGCAGAGTTTCAAATAAGGATGATATCATGAATAAAGACAACCATAGAGATTTGGATGCCAAAATGGCATGGGATGCAGATGAAAATTATGGCATGAAAATGTCTCCAGGGTTCGACGAATGGAAACATAAGAGGCATAGTCAATCCCCACAAAATGGTTTGGAGAGGAGTCGAAGCCGGAGCCGGAGCCCTGCTCGTGGTTTGAGGTGGGAGTCTGGAGCCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCACAGCCATGTAGAGATTTTGCTGCTGGAAAATGCAGAAGAGGCAGTCGTTGCCATTTTCTTCACCATGATAACCGAAATTATGAGGATACCTGGGAGAGTAGAAACAGGAAAGATGGACCTCCCAGATATTCTGCTCCTCATGAGAGTAGGGATTATTCTGTTAGGAGTGGAAGATCTAATGAGACTTGCATTAATTTTGCACAAGGAAAGTGTAGAATGGGGGCATCTTGCAAGTATGTGCATCATAGCAATTCTGATGAACTCAGTAAAGGTACCACAGATGAATTAACTAGAGAGAGGGAATTTGATCGAAGACGCAGAGAGAGTTCTTTTGAGCGGGGTGGAGGGCATGAGCCAAACCGCAGCAGTGATACTCCCTGCAAATTTTATGCTGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATATGCAGGGATCTAGGAGCCCTAATAGAAGGTTAAGGGATGATAGATGGGGAAGCAATACGGGTGGAGATCAGACAATGGATAGACCAAAAGGGAGTAACTCAGTTAGTCCTAGTAGAAGGCTAAGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGATGTGGATAAAGTGTGGGATGGTCCAAAATTGAATGATACAGTTGCTGTCTCTGATACAGCAAAGCTGGGTGAAGATACAAGCGGAAATATGGGTGCCCCAGAACCTGGATTCACTACTTGGCCCAGGAGTGATGGATGGGGCAGTAGTTTAGATAACAGCAGAGTGTTTGCTGAGCCACCAAACGTGGGTGATAAGACAAAAGCAGACCAATGGAAGGCAGAAAATGCTGGTGCTACCATAGGTGTTCCCCAGTCATTAGGTACAGACAAATGGCTTGGTGATGCAGAAATGTCTCCTGATTGGAATTATGGGGTGGGATCTTCTGGGCACATTGAAGACGAGAGCGGACAGAATAAACATGGGTTAGCCCAGGGTGGTACATATTTAGCCACCTCTGAACATCACAGATTACAAGTTGCTCCAGGACAAGGCTTCAATCAGAATGCACAGAGTGTAAATGCTTTGCATCCTTCAAGCTGTAATGTGATTGGACAAAGTCAAGTGGCAGTGCCTGTTGTTCCTCCGCTTGGAGGCATAGTTGAAGGTTTACAGAACCAAGAATTGTCTACTGTAAAAAAGTACAGTGTGGAACCAAATATCATGGACGCAAGCTCATCTCTAGTTAGTACAAGAAACACTCTAACTCAGAACATGGTGAGCAATGAACAACTTGCCCAACTTAGCAGTCTCTCAGCCTCTCTGGTTCATATCCTTGGAGCAGGGCAGCAGCTTCCACAAATTTATGCTGCTTTAAATCCTCATGATGCCAATAGCACTGCCTCCCTTGCCAAAACTGAAGGGTCTGGTGAGCCTGTTTCCAGTACATTCATCAAGCCAGATCCTGCTGTTGGATTCCAGAGGCAGTATGATCCAATGTGTGATAGTATTGAGCCAAAGAAGGCTGATGCAAGTGGGATCACCCCAGCCTTTTCTCCTGGTAAAACAATTGCAGATAATAAAGAAATTTCATCGATATTGTCTGATGCTACGAGACAAAACCTTGGTAATTCTGGTAAGATTGCCAGTTCAGAAGAACAACAAATTGTTAAGAGTGAACATTTAATCCAGTCGCAGCCAGGTCAAAACATTGAAGCTAATAAGGGGAAGAGTGAAGTGGTGGCGGCTGAGGAAAGGCAAGATTCTCAAGCAGATCATAGAAATGCAAAAGATAATGGCCCTTTGGAAAATATGGACCAAAATGAGCCTGATGAGAGCAAGAAAATGAAGGATGTGAAGGGGATTCGAGCTTTTAAATTTGCACTGGTGGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGCCGAATCAACAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGACAAAGTAACTGGTACCATGCAGGGGGCTCATATCCCTCAGACACAAGAGAAAATTGACCACTATTTATCAATTTCAAAATCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGCTCAGAAGACTTAG 2547 0.4366 MSGSGRKRSSKWDLRDEPEFAPDSKQMRSGWSSANLAGSNSSKWSYLEGNDKLKPNSRLPSKEPFSGGRVSNKDDIMNKDNHRDLDAKMAWDADENYGMKMSPGFDEWKHKRHSQSPQNGLERSRSRSRSPARGLRWESGANDRNRMRAGGLPQPCRDFAAGKCRRGSRCHFLHHDNRNYEDTWESRNRKDGPPRYSAPHESRDYSVRSGRSNETCINFAQGKCRMGASCKYVHHSNSDELSKGTTDELTREREFDRRRRESSFERGGGHEPNRSSDTPCKFYAAGNCRNGKYCRFSHDMQGSRSPNRRLRDDRWGSNTGGDQTMDRPKGSNSVSPSRRLRDDRWGPDGNMVDVDKVWDGPKLNDTVAVSDTAKLGEDTSGNMGAPEPGFTTWPRSDGWGSSLDNSRVFAEPPNVGDKTKADQWKAENAGATIGVPQSLGTDKWLGDAEMSPDWNYGVGSSGHIEDESGQNKHGLAQGGTYLATSEHHRLQVAPGQGFNQNAQSVNALHPSSCNVIGQSQVAVPVVPPLGGIVEGLQNQELSTVKKYSVEPNIMDASSSLVSTRNTLTQNMVSNEQLAQLSSLSASLVHILGAGQQLPQIYAALNPHDANSTASLAKTEGSGEPVSSTFIKPDPAVGFQRQYDPMCDSIEPKKADASGITPAFSPGKTIADNKEISSILSDATRQNLGNSGKIASSEEQQIVKSEHLIQSQPGQNIEANKGKSEVVAAEERQDSQADHRNAKDNGPLENMDQNEPDESKKMKDVKGIRAFKFALVEFVKELLKPTWKEGRINKEDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSISKSKLNKLVQAYVEKAQKT 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0957 848 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Bisa02g0957 848 MobiDBLite consensus disorder prediction 1 81 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 26 47 - -
Bisa02g0957 848 SUPERFAMILY CCCH zinc finger 276 299 IPR036855 GO:0046872
Bisa02g0957 848 Gene3D - 272 341 - -
Bisa02g0957 848 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Bisa02g0957 848 SMART c3hfinal6 152 176 IPR000571 GO:0046872
Bisa02g0957 848 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Bisa02g0957 848 MobiDBLite consensus disorder prediction 723 745 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 612 634 - -
Bisa02g0957 848 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Bisa02g0957 848 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
Bisa02g0957 848 MobiDBLite consensus disorder prediction 8 23 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 181 208 - -
Bisa02g0957 848 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Bisa02g0957 848 Gene3D - 152 252 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 236 272 - -
Bisa02g0957 848 Pfam RNA-binding, Nab2-type zinc finger 216 234 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 295 348 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 302 316 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 106 153 - -
Bisa02g0957 848 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 846 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 707 762 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 317 335 - -
Bisa02g0957 848 MobiDBLite consensus disorder prediction 236 280 - -
Bisa02g0957 848 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0957 Bisa-ChrBisa02 16062420 16067396 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g0957 zf-CCCH 0.0002 CL0537